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NC_070866.1__YP_010659292.1__PP760_gp56__00056

Bact-Vir

NC_070866.1__YP_010659292.1__PP760_gp56__00056

Identity

Accession:
NC_070866 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Littlefixvirus› Pseudomonas_phage_98PfluR60PP

TaxID: 2163965

Cluster

View cluster (60 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51_159-228
PDB
Domain cluster: rep: NC_048125.1__YP_009817714.1__HOU80_gp73__00029__D3-58_177-254
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.68 50.0 5.54e-01 98.3% 95.8%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 41.0 4.27e-01 74.8% 67.0%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.65 56.0 5.29e-01 100.0% 77.9%
1vzsA01 1.10.246.110 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 0.57 29.0 3.76e-01 89.1% 90.5%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 46.0 3.62e-01 89.1% 61.7%
2ikbC00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.56 43.0 3.91e-01 92.4% 60.2%
3aqbA00 1.20.120.1450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 40.0 3.93e-01 98.3% 68.1%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.55 48.0 3.35e-01 97.5% 93.5%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.55 49.0 3.33e-01 98.3% 70.6%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 37.0 4.19e-01 95.0% 97.7%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 36.0 3.38e-01 90.8% 56.2%
7b00A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.52 44.0 3.02e-01 93.3% 87.2%
7xv3R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 37.0 2.83e-01 73.1% 76.4%
4omhB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 46.0 3.54e-01 100.0% 81.2%
1t3qC03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 32.0 3.38e-01 95.0% 68.5%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.51 36.0 3.35e-01 74.8% 94.2%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 42.0 3.73e-01 89.9% 62.4%
1xvpB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 45.0 3.58e-01 100.0% 74.8%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.50 34.0 3.92e-01 85.7% 96.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936200 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.65 39.0 3.41e-01 73.9% 40.0%
4959236 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 30.0 3.52e-01 72.3% 67.5%
4004545 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.56 49.0 3.40e-01 96.6% 91.4%
5064698 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.56 36.0 4.09e-01 71.4% 86.7%
3734743 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.54 39.0 3.05e-01 73.9% 69.2%
3467780 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.54 39.0 3.58e-01 73.9% 67.3%
3940022 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.53 35.0 3.66e-01 71.4% 72.7%
3286446 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.52 38.0 3.00e-01 77.3% 78.5%
3221903 5051.1.1.0 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.51 44.0 3.00e-01 95.0% 83.0%
D2 high residues 54-153
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xotA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 45.0 4.82e-01 93.0% 77.9%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 46.0 4.82e-01 100.0% 78.7%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 53.0 4.67e-01 100.0% 58.7%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 48.0 4.27e-01 100.0% 56.0%
2v5mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 48.0 4.74e-01 99.0% 77.9%
1epfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.76e-01 99.0% 85.4%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 45.0 4.24e-01 100.0% 68.9%
2wv3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.46e-01 100.0% 84.0%
4ofyD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.38e-01 97.0% 82.5%
1m5zA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 44.0 4.56e-01 100.0% 91.2%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.56e-01 95.0% 89.8%
1twfA04 3.30.1490.180 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii 0.55 34.0 4.11e-01 100.0% 98.4%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 3.88e-01 100.0% 73.7%
1yukB01 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.53 30.0 3.27e-01 90.0% 66.7%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.15e-01 100.0% 74.6%
1cfmA01 2.60.40.830 Mainly Beta › Sandwich › Immunoglobulin-like › Cytochrome f large domain 0.52 43.0 3.48e-01 100.0% 47.6%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 26.0 3.21e-01 89.0% 80.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1248302 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 46.0 4.70e-01 100.0% 71.4%
5044437 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 52.0 4.88e-01 100.0% 69.2%
5013898 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 46.0 3.83e-01 100.0% 40.6%
2669379 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.66 52.0 4.02e-01 100.0% 39.6%
3214877 10.36.1.2 ↗ beta sandwiches › jelly-roll › hypothetical protein lpg0956 N-terminal domain › hypothetical protein lpg0956 N-terminal domain › GBD_IRG7_N 0.63 45.0 4.21e-01 100.0% 59.2%
3398481 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.73e-01 99.0% 77.1%
1178821 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 47.0 4.19e-01 100.0% 56.0%
3913587 10.32.1.233 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.63 44.0 4.49e-01 100.0% 74.0%
2458450 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.59 46.0 4.49e-01 100.0% 74.3%
3994570 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 49.0 4.34e-01 100.0% 62.1%
3897967 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 46.0 4.46e-01 100.0% 76.4%
3913139 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.58 44.0 4.44e-01 100.0% 81.0%
3920738 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.58 44.0 4.42e-01 100.0% 81.0%
4669467 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 46.0 4.25e-01 99.0% 71.5%
4946447 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 4.18e-01 99.0% 87.8%
3837954 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.54 44.0 4.56e-01 100.0% 95.8%
5047351 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.53 39.0 4.11e-01 100.0% 87.8%
3477455 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 46.0 4.05e-01 100.0% 89.0%