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NC_070866.1__YP_010659296.1__PP760_gp60__00060

Bact-Vir

NC_070866.1__YP_010659296.1__PP760_gp60__00060

Identity

Accession:
NC_070866 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Littlefixvirus› Pseudomonas_phage_98PfluR60PP

TaxID: 2163965

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 26.0 3.95e-01 81.4% 85.3%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 36.0 3.66e-01 100.0% 51.8%
4dzhA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.66 40.0 3.41e-01 95.3% 37.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 35.0 4.41e-01 100.0% 95.7%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.61 37.0 3.40e-01 96.5% 48.1%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.17e-01 100.0% 79.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 35.0 4.01e-01 100.0% 83.9%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 4.45e-01 100.0% 91.0%
2c5qA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.58 50.0 3.76e-01 98.8% 84.9%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 33.0 3.87e-01 88.4% 80.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.37e-01 100.0% 90.9%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.54 29.0 3.44e-01 97.7% 79.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 38.0 3.01e-01 76.7% 62.2%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 3.57e-01 100.0% 72.7%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 40.0 3.52e-01 83.7% 94.2%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 38.0 4.07e-01 100.0% 89.2%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.51 35.0 3.57e-01 93.0% 73.2%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 38.0 3.40e-01 82.6% 91.9%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 28.0 3.59e-01 73.3% 100.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 40.0 4.50e-01 100.0% 70.8%
5043091 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 38.0 4.18e-01 100.0% 64.7%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 39.0 4.31e-01 100.0% 71.4%
2502895 2.27.1.0 ↗ beta barrels › OB-fold 0.62 52.0 5.42e-01 98.8% 100.0%
3310782 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 39.0 4.16e-01 88.4% 77.3%
3205517 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 40.0 4.29e-01 98.8% 84.0%
3774338 292.2.1.6 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.54 34.0 3.18e-01 100.0% 50.9%
1285211 220.1.1.48 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.52 29.0 3.80e-01 87.2% 100.0%