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NC_070871.1__YP_010659701.1__PP765_gp28__00028

Bact-Vir

NC_070871.1__YP_010659701.1__PP765_gp28__00028

Identity

Accession:
NC_070871 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Escherichia_phage_PGN829.1

TaxID: 2315696

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-65
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 75.0 6.39e-01 100.0% 79.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 6.02e-01 90.4% 98.2%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 6.21e-01 90.4% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 66.0 6.25e-01 100.0% 95.2%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.74 64.0 3.97e-01 100.0% 20.9%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.74 65.0 5.84e-01 100.0% 74.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.68e-01 94.2% 88.9%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.06e-01 92.3% 62.4%
2k5iA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.71 61.0 5.44e-01 100.0% 84.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 4.81e-01 94.2% 61.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.54e-01 88.5% 96.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 4.69e-01 100.0% 58.1%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.18e-01 100.0% 64.7%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.36e-01 92.3% 89.8%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.68 49.0 5.32e-01 82.7% 100.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.53e-01 100.0% 91.7%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.22e-01 88.5% 77.7%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.28e-01 88.5% 80.2%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.90e-01 88.5% 73.7%
1wjmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 48.0 3.81e-01 88.5% 74.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 49.0 4.29e-01 88.5% 56.6%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 3.84e-01 88.5% 70.3%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 53.0 4.22e-01 100.0% 46.5%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 39.0 4.44e-01 86.5% 97.1%
2vhlA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 48.0 2.97e-01 88.5% 84.1%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.60 49.0 3.75e-01 96.2% 99.2%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 50.0 3.82e-01 100.0% 38.5%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 50.0 4.21e-01 100.0% 91.2%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 49.0 3.92e-01 96.2% 89.9%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.55 46.0 3.96e-01 100.0% 92.3%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.43e-01 100.0% 40.9%
2dryA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.23e-01 88.5% 96.9%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.53 40.0 2.91e-01 86.5% 57.4%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.32e-01 88.5% 87.9%
8ajqA01 3.90.1590.10 Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) 0.53 41.0 3.26e-01 88.5% 81.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.55e-01 88.5% 77.9%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.53 40.0 3.59e-01 86.5% 82.1%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 2.63e-01 78.8% 90.3%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 39.0 3.33e-01 98.1% 47.8%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 2.60e-01 92.3% 49.1%
1ffvB03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 40.0 2.89e-01 90.4% 36.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.28e-01 98.1% 93.8%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 61.0 5.70e-01 88.5% 81.5%
3524130 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.75 62.0 4.83e-01 92.3% 57.3%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 61.0 5.56e-01 92.3% 85.7%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 61.0 4.79e-01 92.3% 57.3%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.69e-01 90.4% 96.7%
3604750 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.73 61.0 4.18e-01 94.2% 31.9%
3268892 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.73 61.0 3.96e-01 94.2% 24.7%
3484006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 3.97e-01 94.2% 25.4%
4856307 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.73 60.0 4.19e-01 94.2% 33.1%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.72 63.0 5.89e-01 100.0% 78.5%
3507216 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.72 60.0 3.86e-01 94.2% 23.2%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.72 63.0 5.87e-01 100.0% 78.5%
3651964 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.72 62.0 4.82e-01 100.0% 50.0%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.72 63.0 5.88e-01 100.0% 92.3%
3366578 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.72 62.0 4.80e-01 100.0% 50.0%
3592789 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 57.0 3.83e-01 88.5% 42.1%
3743525 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 62.0 4.98e-01 100.0% 68.6%
3831320 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 58.0 3.92e-01 92.3% 31.8%
3504709 4.1.1.4 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e 0.70 59.0 4.36e-01 94.2% 61.5%
2831843 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.88e-01 100.0% 51.0%
3354956 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 57.0 3.95e-01 94.2% 34.1%
3993273 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 60.0 4.63e-01 100.0% 51.7%
3680084 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.68 58.0 5.12e-01 94.2% 82.7%
3466685 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.68 59.0 4.03e-01 100.0% 36.8%
4943079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 3.80e-01 88.5% 51.6%
3538314 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 52.0 4.05e-01 88.5% 65.0%
3887124 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 51.0 3.63e-01 88.5% 44.6%
3902810 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.65 52.0 4.05e-01 92.3% 70.4%
3789132 4.1.1.146 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.65 53.0 3.54e-01 94.2% 32.0%
3512127 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.65 50.0 4.00e-01 88.5% 76.5%
3873956 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 50.0 3.96e-01 88.5% 65.0%
3990213 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.65 51.0 4.18e-01 88.5% 74.0%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.23e-01 98.1% 98.3%
3727053 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 49.0 3.02e-01 86.5% 84.8%
3210739 10.17.1.1 ↗ beta sandwiches › jelly-roll › Acetamidase/Formamidase-like › Acetamidase/Formamidase-like › FmdA_AmdA 0.62 53.0 3.34e-01 98.1% 74.8%
3676320 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.79e-01 98.1% 72.1%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.60 42.0 3.40e-01 76.9% 46.1%
3777607 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.60 45.0 3.20e-01 86.5% 68.6%
5076350 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.60 46.0 2.87e-01 86.5% 83.0%
3938546 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.59 45.0 4.03e-01 88.5% 98.8%
4419527 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.57 44.0 2.76e-01 88.5% 75.4%
3591613 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.57 43.0 3.05e-01 86.5% 67.0%
4032337 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.56 41.0 2.95e-01 80.8% 43.0%
3005973 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.56 46.0 3.29e-01 100.0% 49.4%
5062973 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.31e-01 88.5% 86.9%
4940212 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.55 41.0 4.30e-01 90.4% 93.3%
4389625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.55 40.0 3.99e-01 84.6% 92.7%
4464028 633.23.1.37 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 0.55 41.0 2.77e-01 86.5% 72.2%
3524259 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.54 42.0 2.95e-01 88.5% 71.4%
3389671 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 40.0 2.87e-01 86.5% 67.4%
3843929 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 39.0 2.84e-01 86.5% 68.4%
3888075 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 40.0 2.77e-01 86.5% 67.2%