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NC_070872.1__YP_010659785.1__PP766_gp28__00028

Bact-Vir

NC_070872.1__YP_010659785.1__PP766_gp28__00028

Identity

Accession:
NC_070872 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Escherichia_phage_U1G

TaxID: 2853091

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-64_139-224
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.71 54.0 5.52e-01 81.0% 94.1%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 56.0 4.57e-01 88.6% 74.5%
2b6cA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.62 47.0 4.93e-01 81.9% 89.7%
4wz9A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.61 53.0 3.76e-01 96.2% 61.7%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.60 44.0 3.96e-01 79.0% 62.5%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 45.0 4.33e-01 81.9% 73.4%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 44.0 4.00e-01 92.4% 77.1%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 40.0 3.76e-01 82.9% 91.0%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 32.0 2.96e-01 81.9% 46.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3576811 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 54.0 4.05e-01 84.8% 43.1%
5035132 102.1.1.11 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.64 32.0 3.10e-01 77.1% 43.0%
5074858 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.61 49.0 4.43e-01 86.7% 66.9%
3671005 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.59 44.0 4.15e-01 81.9% 97.8%
4594348 532.2.1.1 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.54 42.0 4.44e-01 83.8% 96.8%
D2 medium residues 65-138
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 42.0 4.91e-01 86.5% 97.9%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 43.0 4.23e-01 89.2% 65.9%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 41.0 4.62e-01 83.8% 94.4%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 4.71e-01 77.0% 100.0%
3smtA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.59 44.0 3.46e-01 81.1% 100.0%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 48.0 4.15e-01 98.6% 84.4%
2nnwA01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 36.0 3.04e-01 71.6% 38.5%
2af6A02 6.10.140.450 Special › Helix non-globular › Helix Hairpins › 0.56 31.0 3.34e-01 73.0% 62.9%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 45.0 4.08e-01 100.0% 79.2%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 39.0 3.94e-01 95.9% 85.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959355 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 65.0 4.35e-01 85.1% 23.1%
4991154 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.80 72.0 6.59e-01 97.3% 76.8%
3484360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 42.0 4.33e-01 86.5% 68.6%
3244955 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 41.0 4.31e-01 89.2% 81.5%
4275568 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 44.0 4.49e-01 97.3% 82.9%
3652032 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 42.0 4.27e-01 90.5% 76.0%
3359036 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 44.0 4.08e-01 91.9% 62.1%
3507888 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 42.0 4.25e-01 91.9% 76.0%
3994687 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 40.0 4.41e-01 90.5% 98.2%
3661753 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 41.0 3.85e-01 90.5% 60.0%
3800383 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 38.0 4.04e-01 86.5% 81.5%
3652283 109.4.1.1335 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.55 37.0 2.35e-01 71.6% 12.7%
3423046 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.53 42.0 4.22e-01 90.5% 86.7%