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NC_070873.1__YP_010659866.1__PP767_gp18__00018

Bact-Vir

NC_070873.1__YP_010659866.1__PP767_gp18__00018

Identity

Accession:
NC_070873 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Escherichia_phage_St11Ph5

TaxID: 2047765

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
Domain cluster: rep: MH733496.1__AXY82560.1__X__00026__DFULL
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 50.0 4.18e-01 80.3% 47.7%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 40.0 3.57e-01 96.7% 41.1%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.62 46.0 3.61e-01 80.3% 79.9%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 45.0 3.71e-01 80.3% 47.0%
2z15A00 3.90.640.90 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain 0.60 44.0 3.64e-01 80.3% 53.8%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.60 42.0 3.97e-01 75.4% 69.7%
3dzaA02 6.10.250.2140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 36.0 3.61e-01 73.8% 56.5%
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 50.0 3.97e-01 100.0% 92.0%
3u60A02 1.20.272.50 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › Bacteriophage clamp loader A subunit, A' domain 0.59 38.0 3.58e-01 80.3% 51.3%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.58 43.0 3.81e-01 80.3% 83.5%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.57 43.0 4.09e-01 83.6% 70.7%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.56 42.0 3.66e-01 82.0% 90.6%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 44.0 3.51e-01 96.7% 81.9%
4o1gA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 43.0 2.78e-01 93.4% 96.3%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 38.0 2.66e-01 75.4% 36.2%
4bkxA01 4.10.1240.50 Few Secondary Structures › Irregular › Hormone receptor fold › 0.52 38.0 3.17e-01 80.3% 55.8%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 36.0 2.67e-01 75.4% 70.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2741727 101.1.10.14 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 0.68 51.0 4.75e-01 80.3% 73.7%
3277828 301.8.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase 0.68 46.0 3.42e-01 80.3% 29.7%
3929290 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.67 49.0 4.72e-01 80.3% 87.1%
3935879 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 49.0 3.50e-01 83.6% 66.2%
5033039 632.11.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 0.63 45.0 4.22e-01 75.4% 69.3%
3413033 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 45.0 3.64e-01 80.3% 70.8%
4232288 4275.1.1.10 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › NifW 0.59 44.0 4.25e-01 82.0% 91.4%
4870551 101.1.10.14 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 0.59 43.0 3.94e-01 80.3% 62.4%
3663214 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 46.0 3.70e-01 91.8% 72.6%
3626373 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 42.0 3.75e-01 80.3% 61.1%
3931209 101.1.10.17 ↗ alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C 0.57 41.0 3.47e-01 80.3% 47.0%
4955330 148.1.3.409 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › BrxL_ATPase 0.54 39.0 3.94e-01 80.3% 88.3%
313688 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.53 40.0 3.27e-01 83.6% 78.5%
4275437 5063.1.1.12 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › ApoO 0.53 42.0 4.31e-01 96.7% 96.7%
4047654 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 41.0 3.08e-01 90.2% 37.5%