Back to structures

NC_070877.1__YP_010660384.1__PP914_gp018__00018

Bact-Vir

NC_070877.1__YP_010660384.1__PP914_gp018__00018

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 57-108
PDB
D2 medium residues 111-170_257-303
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.66 57.0 4.49e-01 94.4% 82.1%
3louA02 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.62 41.0 3.37e-01 92.5% 37.1%
2hw2A00 3.20.170.40 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Rifampin ADP-ribosyltransferase domain 0.61 53.0 4.86e-01 95.3% 81.9%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 28.0 3.32e-01 87.9% 78.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3176205 237.1.1.37 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PF27671 0.72 67.0 5.01e-01 98.1% 64.6%
3256269 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.71 56.0 5.71e-01 83.2% 100.0%
3879371 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.70 56.0 4.68e-01 85.0% 68.9%
3694624 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.69 57.0 4.29e-01 88.8% 66.0%
4014210 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.68 56.0 4.33e-01 87.9% 72.4%
3833168 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.67 57.0 4.15e-01 91.6% 55.2%
3185451 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.67 56.0 4.50e-01 88.8% 60.5%
3845768 11.1.1.21 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac 0.55 42.0 4.18e-01 91.6% 78.2%
D3 medium residues 172-251
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 32.0 3.64e-01 71.2% 65.6%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 38.0 4.20e-01 75.0% 85.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 31.0 3.56e-01 70.0% 71.4%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 45.0 3.75e-01 100.0% 70.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3201922 101.1.3.15 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-binding 0.57 29.0 3.19e-01 76.2% 55.4%
3486933 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 30.0 3.05e-01 77.5% 48.8%
3677431 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 40.0 2.99e-01 75.0% 67.0%
5049590 1015.1.1.2 alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Caroten_synth 0.55 45.0 3.09e-01 92.5% 88.5%
4361149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 37.0 3.46e-01 76.2% 84.8%
3718415 102.1.3.19 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PF26180 0.50 43.0 3.22e-01 98.8% 67.7%