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NC_070877.1__YP_010660402.1__PP914_gp036__00036

Bact-Vir

NC_070877.1__YP_010660402.1__PP914_gp036__00036

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Quivirus› Arthrobacter_phage_Qui

TaxID: 2603260

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-137
PDB
Domain cluster: rep: OV032902.1__CAH0447865.1__SM033_00041__00041__D223-274
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.89 67.0 5.34e-01 78.8% 46.3%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 60.0 6.44e-01 76.9% 95.6%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.79 59.0 6.17e-01 82.7% 87.5%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.78 60.0 6.09e-01 84.6% 84.3%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.75 64.0 5.74e-01 96.2% 69.9%
3frnA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.69 49.0 4.49e-01 75.0% 88.2%
3d4rB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 48.0 4.44e-01 75.0% 77.9%
2wqpA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.68 47.0 4.28e-01 75.0% 78.1%
4tkoB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 49.0 4.52e-01 76.9% 75.8%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.66 49.0 3.73e-01 80.8% 56.5%
3lazA01 2.30.130.110 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.65 47.0 4.16e-01 78.8% 91.1%
1z6hA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 46.0 4.18e-01 76.9% 76.4%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 48.0 3.44e-01 84.6% 48.7%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 41.0 3.35e-01 84.6% 83.7%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 37.0 3.48e-01 76.9% 95.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 71.0 6.78e-01 86.5% 81.4%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 67.0 6.73e-01 82.7% 90.6%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.82 62.0 6.35e-01 84.6% 84.0%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 69.0 6.64e-01 90.4% 82.8%
3032323 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.81 63.0 4.84e-01 86.5% 61.0%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 65.0 6.75e-01 96.2% 95.8%
3057047 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.75 65.0 5.88e-01 96.2% 95.7%
3412645 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.74 53.0 4.84e-01 82.7% 57.1%
3516371 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.70 53.0 4.13e-01 82.7% 40.9%
5021658 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 45.0 4.58e-01 75.0% 68.0%
3587047 70.3.1.3 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.69 49.0 4.36e-01 75.0% 75.7%
3241120 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.69 53.0 4.96e-01 84.6% 70.8%
4159528 70.3.1.3 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.68 48.0 4.37e-01 75.0% 80.0%
3970891 70.3.1.18 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA 0.68 48.0 4.48e-01 75.0% 92.3%
1295900 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.65 47.0 3.94e-01 78.8% 76.6%
4144942 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.65 47.0 4.06e-01 78.8% 94.1%
4123066 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.65 47.0 4.14e-01 78.8% 90.0%
5024532 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.64 45.0 3.91e-01 76.9% 91.8%
1714447 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 49.0 3.69e-01 88.5% 97.0%
3817355 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.61 47.0 3.56e-01 86.5% 83.1%
3946545 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.55 39.0 3.36e-01 75.0% 50.6%
4268048 70.3.1.3 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.54 37.0 3.53e-01 75.0% 86.2%