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NC_070877.1__YP_010660518.1__PP914_gp152__00152
Bact-VirNC_070877.1__YP_010660518.1__PP914_gp152__00152
Identity
- Accession:
- NC_070877 ↗
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Taxonomy
TaxID: 2603260
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-109
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.74 | 62.0 | 6.13e-01 | 87.3% | 97.2% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.61 | 29.0 | 3.75e-01 | 80.4% | 86.3% |
| 6sulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 34.0 | 3.42e-01 | 100.0% | 56.5% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.55 | 43.0 | 3.69e-01 | 83.3% | 74.1% |
| 5umbA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 47.0 | 3.93e-01 | 98.0% | 84.0% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 28.0 | 3.49e-01 | 97.1% | 86.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.75 | 61.0 | 5.89e-01 | 86.3% | 100.0% |
| 4963287 | 375.1.1.334 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 | 0.56 | 29.0 | 3.68e-01 | 90.2% | 89.1% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 29.0 | 3.29e-01 | 91.2% | 68.0% |
| 3692769 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 46.0 | 3.66e-01 | 98.0% | 66.5% |
| 3203652 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.53 | 45.0 | 3.12e-01 | 99.0% | 39.5% |
| 3260099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 34.0 | 3.62e-01 | 95.1% | 76.7% |
| 5022933 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.51 | 26.0 | 3.38e-01 | 89.2% | 89.1% |
| 4114247 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.50 | 29.0 | 3.45e-01 | 94.1% | 84.3% |