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NC_070877.1__YP_010660531.1__PP914_gp165__00165
Bact-VirNC_070877.1__YP_010660531.1__PP914_gp165__00165
Identity
- Accession:
- NC_070877 ↗
- Kingdom:
- phage
Quality
67.3
mean pLDDT
Taxonomy
TaxID: 2603260
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.71 | 53.0 | 5.04e-01 | 87.5% | 68.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.69 | 62.0 | 5.26e-01 | 100.0% | 95.7% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 60.0 | 4.17e-01 | 100.0% | 35.1% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 43.0 | 3.76e-01 | 87.5% | 40.9% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.68 | 52.0 | 4.41e-01 | 83.9% | 68.1% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.68 | 61.0 | 5.10e-01 | 100.0% | 93.6% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.68 | 55.0 | 4.28e-01 | 89.3% | 52.9% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 42.0 | 3.46e-01 | 87.5% | 34.6% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 61.0 | 4.54e-01 | 100.0% | 60.9% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.67 | 53.0 | 4.51e-01 | 89.3% | 57.3% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 56.0 | 4.26e-01 | 100.0% | 86.8% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 53.0 | 4.75e-01 | 100.0% | 64.6% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 51.0 | 4.24e-01 | 89.3% | 49.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.65 | 54.0 | 3.99e-01 | 100.0% | 93.4% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 50.0 | 4.54e-01 | 96.4% | 61.3% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 56.0 | 4.46e-01 | 100.0% | 60.5% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 55.0 | 4.67e-01 | 100.0% | 61.1% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.63 | 55.0 | 4.34e-01 | 100.0% | 79.2% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 53.0 | 4.52e-01 | 100.0% | 64.3% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 56.0 | 4.16e-01 | 100.0% | 66.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 4.83e-01 | 94.6% | 75.8% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.62 | 52.0 | 4.06e-01 | 100.0% | 42.1% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.62 | 54.0 | 3.26e-01 | 100.0% | 73.5% |
| 2fr5A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 53.0 | 4.07e-01 | 100.0% | 66.9% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.60 | 49.0 | 4.59e-01 | 100.0% | 72.4% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.60 | 45.0 | 4.65e-01 | 89.3% | 96.0% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.59 | 51.0 | 4.05e-01 | 98.2% | 53.0% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 3.63e-01 | 85.7% | 76.9% |
| 1b66A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.58 | 50.0 | 3.87e-01 | 100.0% | 65.9% |
| 2o34A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.58 | 47.0 | 3.23e-01 | 100.0% | 24.1% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 40.0 | 2.60e-01 | 73.2% | 89.9% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.58 | 43.0 | 3.30e-01 | 87.5% | 41.4% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 47.0 | 3.95e-01 | 100.0% | 91.8% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 37.0 | 3.72e-01 | 83.9% | 64.9% |
| 2iciA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 44.0 | 3.49e-01 | 100.0% | 78.5% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 47.0 | 4.20e-01 | 100.0% | 96.5% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.55 | 41.0 | 3.76e-01 | 91.1% | 59.0% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 47.0 | 3.41e-01 | 98.2% | 60.2% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.55 | 42.0 | 4.06e-01 | 83.9% | 89.1% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 41.0 | 3.58e-01 | 85.7% | 79.8% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 41.0 | 3.85e-01 | 83.9% | 79.2% |
| 6eo5B01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 37.0 | 2.52e-01 | 75.0% | 69.8% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.53 | 41.0 | 4.09e-01 | 83.9% | 100.0% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.97e-01 | 89.3% | 79.4% |
| 1yudA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 47.0 | 3.38e-01 | 100.0% | 41.3% |
| 1v5tA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 43.0 | 3.80e-01 | 100.0% | 80.0% |
| 2lw3A00 | 2.60.40.2880 | Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain | 0.52 | 41.0 | 3.64e-01 | 92.9% | 78.9% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 44.0 | 3.67e-01 | 100.0% | 62.4% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 44.0 | 3.20e-01 | 100.0% | 40.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4632256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 62.0 | 5.62e-01 | 85.7% | 94.7% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.74 | 59.0 | 5.51e-01 | 87.5% | 98.6% |
| 3289401 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.73 | 65.0 | 4.92e-01 | 100.0% | 50.0% |
| 3706132 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 65.0 | 5.61e-01 | 100.0% | 98.8% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.71 | 57.0 | 5.24e-01 | 89.3% | 97.3% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.70 | 58.0 | 4.42e-01 | 89.3% | 48.8% |
| 4961379 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.69 | 53.0 | 3.56e-01 | 91.1% | 21.8% |
| 3200355 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.66 | 59.0 | 5.03e-01 | 100.0% | 83.3% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.66 | 47.0 | 5.01e-01 | 87.5% | 95.6% |
| 4155354 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.65 | 53.0 | 4.15e-01 | 89.3% | 43.3% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.65 | 46.0 | 4.90e-01 | 87.5% | 95.6% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.65 | 45.0 | 4.81e-01 | 83.9% | 93.3% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.64 | 48.0 | 4.71e-01 | 83.9% | 75.0% |
| 3423236 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 54.0 | 4.91e-01 | 94.6% | 72.0% |
| 4383356 | 3615.1.1.49 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Dynamin_N | 0.63 | 56.0 | 3.14e-01 | 100.0% | 8.5% |
| 2387834 | 5.4.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like | 0.62 | 48.0 | 3.46e-01 | 100.0% | 30.7% |
| 5024082 | 230.4.1.2 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact | 0.61 | 50.0 | 4.06e-01 | 100.0% | 54.2% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.60 | 43.0 | 4.58e-01 | 87.5% | 97.8% |
| 3991455 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.60 | 40.0 | 4.06e-01 | 98.2% | 70.9% |
| 4135575 | 304.7.1.25 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Se_S_carrier | 0.60 | 52.0 | 4.64e-01 | 100.0% | 97.5% |
| 3270933 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.59 | 38.0 | 3.00e-01 | 71.4% | 29.6% |
| 5049764 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 39.0 | 3.18e-01 | 71.4% | 37.4% |
| 3783481 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.56 | 47.0 | 3.79e-01 | 100.0% | 66.7% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.56 | 47.0 | 4.42e-01 | 98.2% | 78.3% |
| 3621342 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 46.0 | 3.90e-01 | 92.9% | 80.0% |
| 5014799 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 45.0 | 3.57e-01 | 87.5% | 51.8% |
| 3196947 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 44.0 | 2.52e-01 | 91.1% | 8.9% |
| 4978421 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.54 | 46.0 | 3.72e-01 | 100.0% | 69.2% |
| 3256796 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.54 | 47.0 | 4.23e-01 | 100.0% | 90.0% |
| 3618240 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 45.0 | 3.71e-01 | 92.9% | 76.0% |
| 3598685 | 230.4.1.0 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like | 0.53 | 42.0 | 3.58e-01 | 100.0% | 91.3% |
| 5059050 | 221.10.1.0 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain | 0.53 | 43.0 | 4.22e-01 | 100.0% | 87.7% |
| 3231131 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 42.0 | 3.64e-01 | 100.0% | 97.1% |
| 5053230 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 35.0 | 2.87e-01 | 73.2% | 32.5% |
| 3630069 | 223.1.1.101 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 | 0.52 | 37.0 | 2.20e-01 | 82.1% | 62.4% |
| 3223489 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.52 | 35.0 | 2.82e-01 | 73.2% | 77.7% |
| 3937833 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 37.0 | 2.61e-01 | 82.1% | 99.5% |