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NC_070877.1__YP_010660546.1__PP914_gp180__00180

Bact-Vir

NC_070877.1__YP_010660546.1__PP914_gp180__00180

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Quivirus› Arthrobacter_phage_Qui

TaxID: 2603260

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-89
PDB
Domain cluster: rep: NC_070877.1__YP_010660572.1__PP914_gp206__00206__D6-62
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.66 43.0 3.58e-01 100.0% 38.0%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 42.0 4.73e-01 94.8% 100.0%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 45.0 3.69e-01 100.0% 46.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.34e-01 98.7% 98.3%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.55 47.0 4.75e-01 98.7% 98.7%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.55 39.0 4.03e-01 100.0% 80.8%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 41.0 4.31e-01 96.1% 92.9%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.98e-01 97.4% 70.2%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.96e-01 97.4% 92.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3950193 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.63 42.0 4.89e-01 98.7% 100.0%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 43.0 2.55e-01 100.0% 8.8%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.51e-01 100.0% 85.7%
3588979 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.61 43.0 4.76e-01 97.4% 94.9%
5050051 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 36.0 2.91e-01 75.3% 33.3%
4023063 216.1.1.8 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C 0.55 38.0 3.57e-01 71.4% 68.4%
4068131 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 39.0 3.67e-01 98.7% 62.1%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 39.0 3.93e-01 100.0% 75.0%
3714031 5.1.3.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Pep3_Vps18 0.54 38.0 2.90e-01 74.0% 78.9%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 39.0 4.01e-01 98.7% 81.3%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.47e-01 94.8% 100.0%
3176267 325.1.7.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H 0.52 45.0 3.79e-01 100.0% 96.4%
4932109 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.52 39.0 4.11e-01 81.8% 88.6%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.52 39.0 3.80e-01 100.0% 71.1%
4027491 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 44.0 3.98e-01 97.4% 96.4%
3821751 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.51 42.0 4.17e-01 100.0% 88.7%
3951961 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.51 41.0 3.83e-01 100.0% 72.6%
3627094 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 36.0 2.39e-01 75.3% 23.7%
D2 high residues 106-171
PDB