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NC_070877.1__YP_010660561.1__PP914_gp195__00195

Bact-Vir

NC_070877.1__YP_010660561.1__PP914_gp195__00195

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Quivirus› Arthrobacter_phage_Qui

TaxID: 2603260

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-73
PDB
Domain cluster: rep: MN234168.1__QFG08733.1__PBI_INGRID_61__00061__D29-92
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.62 53.0 3.64e-01 97.1% 63.3%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.58 28.0 3.51e-01 82.4% 77.1%
1ev0A00 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.57 33.0 3.55e-01 82.4% 65.5%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 44.0 3.40e-01 88.2% 82.4%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.55 28.0 3.39e-01 89.7% 78.4%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 39.0 3.23e-01 76.5% 78.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.53 31.0 3.13e-01 80.9% 56.1%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 45.0 3.16e-01 94.1% 73.5%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.64e-01 83.8% 80.9%
5ja2A01 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.51 40.0 2.80e-01 89.7% 66.7%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 41.0 3.36e-01 92.6% 96.4%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.51 42.0 3.34e-01 92.6% 83.2%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 39.0 3.18e-01 86.8% 63.8%
4xfjA02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.50 42.0 3.14e-01 97.1% 60.4%
2z2mD01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.50 35.0 3.72e-01 85.3% 86.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3849360 376.1.3.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.82 59.0 5.68e-01 100.0% 68.0%
4949606 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.67 43.0 2.89e-01 98.5% 17.6%
3623344 812.1.1.0 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.64 35.0 3.84e-01 85.3% 65.5%
3459249 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 35.0 2.89e-01 85.3% 30.0%
3651057 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 33.0 2.59e-01 88.2% 23.9%
3596623 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 37.0 3.45e-01 77.9% 52.2%
5053551 3241.1.1.1 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.56 42.0 3.12e-01 85.3% 61.0%
3694293 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 40.0 2.95e-01 77.9% 30.5%
3508428 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 38.0 2.81e-01 70.6% 51.7%
8227 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.55 43.0 4.34e-01 91.2% 84.3%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.54 38.0 4.32e-01 88.2% 100.0%
3370568 4111.1.1.0 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like 0.54 33.0 2.88e-01 88.2% 38.1%
3197950 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.53 34.0 4.02e-01 83.8% 100.0%
2324017 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.53 39.0 3.26e-01 79.4% 84.4%
141918 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.53 40.0 3.05e-01 83.8% 42.4%
5051534 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 39.0 2.92e-01 83.8% 39.5%
3332006 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.51 38.0 3.29e-01 83.8% 57.5%
3789199 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 38.0 3.19e-01 82.4% 47.0%
3271747 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 42.0 3.46e-01 91.2% 78.4%
3755617 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.50 36.0 3.13e-01 77.9% 61.4%
3285382 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 38.0 3.31e-01 83.8% 67.3%