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NC_070877.1__YP_010660571.1__PP914_gp205__00205

Bact-Vir

NC_070877.1__YP_010660571.1__PP914_gp205__00205

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Quivirus› Arthrobacter_phage_Qui

TaxID: 2603260

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-64
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kk4A01 1.10.3990.20 Mainly Alpha › Orthogonal Bundle › Ribbon-helix-helix fold › protein bp1543 0.69 41.0 3.27e-01 83.9% 30.3%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.68 46.0 4.67e-01 100.0% 72.7%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 48.0 2.81e-01 92.9% 34.7%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.57 43.0 3.77e-01 94.6% 53.5%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.42e-01 85.7% 71.8%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.55 35.0 3.51e-01 85.7% 63.2%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 42.0 2.72e-01 87.5% 51.3%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.54 40.0 3.47e-01 92.9% 50.5%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.23e-01 80.4% 72.6%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 2.84e-01 71.4% 63.6%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 36.0 2.82e-01 73.2% 34.6%
3emiA00 3.90.1780.10 Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin 0.52 38.0 3.17e-01 82.1% 70.0%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 37.0 2.81e-01 71.4% 40.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 38.0 2.97e-01 80.4% 60.8%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.44e-01 85.7% 74.2%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.51 36.0 2.31e-01 78.6% 85.2%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.87e-01 100.0% 85.7%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.13e-01 85.7% 57.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 50.0 5.39e-01 98.2% 93.3%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.66 45.0 4.55e-01 100.0% 71.4%
3680858 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 37.0 2.62e-01 87.5% 18.2%
4293536 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.66 43.0 4.47e-01 100.0% 76.0%
3550551 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.61 45.0 2.98e-01 80.4% 76.9%
3701675 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 42.0 4.00e-01 78.6% 69.1%
3611121 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 2.83e-01 82.1% 32.1%
4946426 3241.1.1.0 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.56 43.0 2.98e-01 87.5% 56.3%
3813009 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.56 42.0 2.58e-01 80.4% 84.3%
3381794 207.1.1.57 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.56 39.0 2.17e-01 76.8% 29.8%
3377656 207.1.1.137 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.55 39.0 2.28e-01 76.8% 59.2%
3550522 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.54 41.0 3.32e-01 85.7% 68.7%
2409292 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 41.0 3.42e-01 85.7% 63.5%
3079244 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.54 30.0 2.93e-01 78.6% 46.7%
4505972 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 38.0 2.41e-01 78.6% 52.8%
4940950 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.52 40.0 3.63e-01 85.7% 81.2%
5031473 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 39.0 3.26e-01 85.7% 63.8%
3320790 304.4.1.43 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Transferase 0.51 39.0 3.05e-01 83.9% 85.8%
4940345 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 39.0 2.99e-01 85.7% 50.4%
4973203 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 30.0 3.18e-01 83.9% 66.0%