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NC_070877.1__YP_010660572.1__PP914_gp206__00206

Bact-Vir

NC_070877.1__YP_010660572.1__PP914_gp206__00206

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Quivirus› Arthrobacter_phage_Qui

TaxID: 2603260

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-62
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.66 57.0 5.32e-01 98.2% 79.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.92e-01 98.2% 82.1%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.63 51.0 3.92e-01 100.0% 38.0%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 51.0 5.20e-01 93.0% 100.0%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.71e-01 91.2% 70.2%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.59 49.0 4.06e-01 98.2% 76.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 48.0 3.78e-01 91.2% 55.0%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.58 48.0 3.93e-01 98.2% 73.9%
1zsqA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.89e-01 91.2% 92.1%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 47.0 3.69e-01 93.0% 88.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 46.0 4.41e-01 96.5% 91.4%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.48e-01 87.7% 60.5%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.74e-01 91.2% 77.8%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 46.0 2.98e-01 94.7% 96.6%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.56 46.0 4.00e-01 100.0% 89.1%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 39.0 2.58e-01 73.7% 41.6%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.56 44.0 4.26e-01 87.7% 87.9%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.55 40.0 3.87e-01 78.9% 72.3%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 38.0 3.59e-01 75.4% 72.2%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 43.0 2.80e-01 94.7% 91.3%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 42.0 3.75e-01 91.2% 98.9%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.53 41.0 2.77e-01 89.5% 39.7%
1yo8A02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.52 35.0 3.61e-01 70.2% 78.6%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.39e-01 91.2% 66.1%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.30e-01 84.2% 88.5%
2rhqB03 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.52 37.0 2.59e-01 94.7% 21.8%
2qj8A00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 38.0 2.41e-01 78.9% 39.5%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 44.0 4.33e-01 98.2% 96.8%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 45.0 3.89e-01 100.0% 72.2%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 39.0 2.93e-01 87.7% 72.7%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.51 39.0 2.99e-01 94.7% 64.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.66e-01 93.0% 96.4%
4998148 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.31e-01 96.5% 90.9%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.48e-01 96.5% 98.2%
3837995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.32e-01 96.5% 92.7%
3950193 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.64 54.0 5.56e-01 98.2% 100.0%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.01e-01 100.0% 84.3%
3964666 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.63 54.0 5.32e-01 94.7% 90.0%
3177591 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.62 50.0 3.36e-01 91.2% 62.2%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 50.0 4.91e-01 96.5% 87.7%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.09e-01 98.2% 100.0%
3224815 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 47.0 3.88e-01 87.7% 84.3%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 51.0 4.93e-01 98.2% 87.7%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.89e-01 100.0% 85.7%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.61 51.0 4.68e-01 100.0% 98.8%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 2.89e-01 100.0% 9.0%
3588979 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.60 53.0 5.27e-01 98.2% 94.9%
3895736 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.60 48.0 3.36e-01 91.2% 70.0%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.60 51.0 4.72e-01 98.2% 81.3%
3649749 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.60 37.0 2.52e-01 78.9% 16.1%
5034351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.85e-01 87.7% 100.0%
3704356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.59e-01 100.0% 71.2%
3744353 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.59 42.0 4.29e-01 77.2% 98.2%
4076971 2.1.1.35 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rho_RNA_bind 0.59 39.0 3.58e-01 73.7% 50.0%
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.58 48.0 4.62e-01 100.0% 88.6%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 45.0 3.24e-01 91.2% 70.3%
1557343 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 46.0 4.41e-01 96.5% 91.4%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.58 48.0 3.59e-01 100.0% 37.0%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 48.0 4.46e-01 98.2% 81.3%
3296865 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.57 48.0 4.06e-01 100.0% 58.1%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.57 47.0 4.49e-01 96.5% 98.6%
4426276 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.25e-01 93.0% 98.6%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.56 47.0 4.32e-01 100.0% 81.2%
3506540 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.56 44.0 3.61e-01 89.5% 85.2%
3596151 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 45.0 3.79e-01 93.0% 84.8%
3626533 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 43.0 2.99e-01 91.2% 60.5%
3413668 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 42.0 3.73e-01 89.5% 96.7%
4678702 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.54 41.0 3.34e-01 87.7% 60.8%
3268833 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 2.82e-01 75.4% 48.8%
3627859 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.53 42.0 3.93e-01 91.2% 92.0%
4931458 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 42.0 3.63e-01 100.0% 56.8%
3230548 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.52 41.0 2.88e-01 91.2% 66.5%
3479602 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 41.0 2.84e-01 91.2% 69.5%
D2 medium residues 66-97
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.80 65.0 4.52e-01 100.0% 28.9%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.80 63.0 4.97e-01 100.0% 44.9%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.78 63.0 3.69e-01 93.8% 91.1%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.73 56.0 3.52e-01 90.6% 18.0%
1o5wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 58.0 3.55e-01 100.0% 14.7%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.71 56.0 4.10e-01 87.5% 42.4%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 3.96e-01 87.5% 38.6%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.68 55.0 4.24e-01 93.8% 45.3%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 53.0 3.81e-01 100.0% 29.8%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.67 53.0 3.70e-01 100.0% 25.8%
2z86D01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.65 50.0 2.89e-01 87.5% 9.6%
2e28A03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.64 55.0 3.67e-01 100.0% 51.1%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 51.0 3.45e-01 100.0% 72.8%
2o4cA03 3.30.1370.170 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain 0.56 47.0 3.47e-01 90.6% 65.9%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 42.0 3.66e-01 100.0% 69.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519163 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 68.0 4.04e-01 100.0% 13.5%
3822784 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.80 64.0 4.76e-01 100.0% 33.7%
4452139 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.78 67.0 4.27e-01 100.0% 64.7%
3937617 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.75 60.0 4.60e-01 100.0% 37.6%
4201756 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.74 61.0 5.25e-01 100.0% 58.2%
5079587 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.73 57.0 3.81e-01 100.0% 22.7%
4210471 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 56.0 3.48e-01 100.0% 19.5%
3213576 1145.1.1.0 ↗ few secondary structure elements › nigellin-1.1 › nigellin-1.1 › nigellin-1.1 0.69 56.0 5.53e-01 100.0% 88.6%
3285621 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 58.0 4.39e-01 100.0% 88.7%
3722689 148.1.1.12 ↗ alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.64 55.0 3.71e-01 96.9% 31.7%
3597278 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.53e-01 96.9% 36.7%