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NC_070877.1__YP_010660577.1__PP914_gp211__00211

Bact-Vir

NC_070877.1__YP_010660577.1__PP914_gp211__00211

Identity

Accession:
NC_070877 ↗
Kingdom:
phage

Quality

66.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Quivirus› Arthrobacter_phage_Qui

TaxID: 2603260

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-78
PDB
D2 high residues 81-128
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.90 70.0 5.31e-01 83.3% 38.8%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.89 63.0 5.96e-01 75.0% 70.2%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.86 60.0 5.40e-01 77.1% 54.7%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.85 61.0 4.30e-01 77.1% 27.7%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.84 54.0 4.78e-01 85.4% 47.8%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.83 58.0 4.75e-01 79.2% 41.4%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.81 65.0 5.28e-01 89.6% 47.7%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.80 65.0 6.04e-01 89.6% 71.7%
2x9qB00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.80 69.0 4.40e-01 100.0% 20.7%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.80 71.0 6.24e-01 100.0% 72.9%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.80 56.0 5.45e-01 79.2% 67.9%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.79 55.0 4.87e-01 79.2% 50.7%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.78 59.0 4.70e-01 83.3% 41.2%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 4.35e-01 83.3% 63.6%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.78 52.0 3.14e-01 75.0% 10.6%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 63.0 5.48e-01 89.6% 72.2%
4h0oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 57.0 3.67e-01 79.2% 20.0%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.76 62.0 4.29e-01 89.6% 30.9%
3kb9A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.74 65.0 3.87e-01 97.9% 39.7%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.73 61.0 4.37e-01 95.8% 34.5%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.72 61.0 4.37e-01 97.9% 38.9%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 53.0 3.35e-01 89.6% 89.8%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.68 57.0 3.51e-01 95.8% 98.6%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.67 53.0 4.78e-01 87.5% 69.7%
3gagA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.66 55.0 3.62e-01 95.8% 50.5%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.65 47.0 3.90e-01 87.5% 41.2%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.64 48.0 4.13e-01 89.6% 72.7%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.62 47.0 3.94e-01 85.4% 45.6%
3pe8A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 49.0 3.25e-01 91.7% 61.6%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 44.0 2.83e-01 77.1% 44.8%
4kd6A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.59 47.0 3.18e-01 91.7% 81.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492824 103.15.1.1 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23 0.95 70.0 4.95e-01 77.1% 29.6%
4600245 3640.1.1.1 ↗ alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.92 79.0 6.50e-01 93.8% 55.7%
4061431 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.91 65.0 6.45e-01 79.2% 72.0%
3579091 103.15.1.1 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23 0.91 81.0 5.78e-01 100.0% 35.8%
5080036 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.90 80.0 5.07e-01 97.9% 21.9%
4034454 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.90 78.0 5.59e-01 97.9% 36.0%
3685507 109.2.1.39 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Ldi 0.90 69.0 3.93e-01 85.4% 9.5%
3970206 857.1.1.0 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like 0.90 67.0 6.01e-01 81.2% 58.5%
3404381 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.89 62.0 6.45e-01 77.1% 77.8%
3809576 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.88 71.0 6.35e-01 91.7% 64.6%
3970007 3502.1.1.0 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.87 62.0 5.24e-01 75.0% 48.0%
3503648 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 61.0 5.66e-01 79.2% 60.0%
3587822 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.86 61.0 4.36e-01 79.2% 27.7%
3930859 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 60.0 5.14e-01 79.2% 48.0%
3398172 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 60.0 4.59e-01 79.2% 34.3%
3289153 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 57.0 3.40e-01 70.8% 12.8%
3643664 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.83 66.0 5.55e-01 83.3% 58.7%
3483536 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.83 73.0 5.44e-01 100.0% 41.7%
3426642 375.1.1.96 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.82 61.0 6.03e-01 85.4% 76.0%
4525857 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.79 66.0 4.20e-01 93.8% 19.7%
4271175 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.79 60.0 4.25e-01 83.3% 28.9%
3870636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.34e-01 83.3% 60.0%
3741476 101.1.2.527 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.78 60.0 4.73e-01 85.4% 52.0%
3283939 3781.2.1.0 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related 0.78 69.0 4.87e-01 100.0% 34.3%
3416236 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.77 53.0 5.47e-01 77.1% 77.8%
4591464 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.76 64.0 4.16e-01 93.8% 21.5%
3231065 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.75 54.0 3.41e-01 83.3% 15.1%
5048048 4957.1.1.9 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.75 58.0 4.98e-01 85.4% 53.3%
3997160 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.74 64.0 5.10e-01 100.0% 76.0%