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NC_070877.1__YP_010660605.1__PP914_gp239__00239
Bact-VirNC_070877.1__YP_010660605.1__PP914_gp239__00239
Identity
- Accession:
- NC_070877 ↗
- Kingdom:
- phage
Quality
67.6
mean pLDDT
Taxonomy
TaxID: 2603260
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-116
Domain cluster:
rep: NC_070877.1__YP_010660489.1__PP914_gp123__00123__D21-39_51-92
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.66 | 33.0 | 4.01e-01 | 93.2% | 75.0% |
| 2e2dC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 48.0 | 4.40e-01 | 76.7% | 87.2% |
| 3v38A00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.65 | 53.0 | 3.53e-01 | 91.8% | 88.5% |
| 1jqgA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 52.0 | 3.50e-01 | 94.5% | 92.9% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 3.90e-01 | 74.0% | 85.2% |
| 5mrvA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 52.0 | 3.53e-01 | 95.9% | 93.5% |
| 1tkjA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.61 | 51.0 | 3.60e-01 | 100.0% | 94.9% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.30e-01 | 75.3% | 96.0% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.60 | 42.0 | 3.48e-01 | 76.7% | 77.9% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 4.35e-01 | 79.5% | 98.6% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 41.0 | 3.65e-01 | 75.3% | 68.0% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.57 | 40.0 | 3.64e-01 | 75.3% | 90.2% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.56 | 45.0 | 4.11e-01 | 87.7% | 90.9% |
| 2qzbA00 | 2.60.460.10 | Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain | 0.56 | 48.0 | 3.89e-01 | 97.3% | 98.6% |
| 2lkoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 33.0 | 2.71e-01 | 74.0% | 30.4% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 44.0 | 2.93e-01 | 89.0% | 93.4% |
| 4hc5D00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 43.0 | 3.65e-01 | 91.8% | 84.7% |
| 4l0mA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.53 | 43.0 | 3.14e-01 | 94.5% | 82.6% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 3.36e-01 | 83.6% | 77.0% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 45.0 | 3.74e-01 | 97.3% | 62.9% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 42.0 | 3.33e-01 | 91.8% | 91.0% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.21e-01 | 100.0% | 75.9% |
| 1orvA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 36.0 | 2.61e-01 | 76.7% | 96.9% |
| 1odhA01 | 2.20.25.670 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain | 0.51 | 39.0 | 3.98e-01 | 83.6% | 100.0% |
| 2opjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 38.0 | 3.61e-01 | 79.5% | 100.0% |
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.51 | 37.0 | 3.34e-01 | 79.5% | 97.2% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 43.0 | 3.77e-01 | 98.6% | 94.0% |
| 3lxuX02 | 2.20.25.690 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 39.0 | 3.93e-01 | 89.0% | 83.3% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 41.0 | 3.72e-01 | 91.8% | 94.2% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 40.0 | 3.17e-01 | 89.0% | 75.0% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.50 | 42.0 | 4.21e-01 | 94.5% | 97.3% |
| 1lgpA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.50 | 30.0 | 2.63e-01 | 94.5% | 38.9% |
| 4hesA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 41.0 | 2.82e-01 | 93.2% | 74.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3866247 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.69 | 50.0 | 5.13e-01 | 76.7% | 87.1% |
| 5061147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 47.0 | 4.32e-01 | 74.0% | 83.2% |
| 3802643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 44.0 | 4.09e-01 | 75.3% | 91.6% |
| 3420092 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 42.0 | 4.18e-01 | 74.0% | 90.0% |
| 3809302 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 41.0 | 4.01e-01 | 72.6% | 83.5% |
| 3293126 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.60 | 44.0 | 3.57e-01 | 79.5% | 80.0% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.57 | 44.0 | 4.33e-01 | 84.9% | 98.8% |
| 3670595 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 42.0 | 3.92e-01 | 80.8% | 74.7% |
| 5001270 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.57 | 41.0 | 4.07e-01 | 83.6% | 71.2% |
| 3235708 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 42.0 | 3.82e-01 | 79.5% | 96.0% |
| 3222713 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 42.0 | 3.84e-01 | 80.8% | 88.0% |
| 6647 | 241.8.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › GK1464-like › GK1464-like › DUF5634 | 0.56 | 45.0 | 4.10e-01 | 87.7% | 91.0% |
| 3226126 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 40.0 | 3.35e-01 | 74.0% | 46.7% |
| 4090939 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 40.0 | 3.91e-01 | 76.7% | 90.0% |
| 3968774 | 3772.1.1.1 ↗ | beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR | 0.56 | 43.0 | 3.59e-01 | 83.6% | 61.5% |
| 2071899 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.55 | 45.0 | 3.54e-01 | 91.8% | 66.9% |
| 3220873 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.55 | 42.0 | 3.84e-01 | 82.2% | 91.0% |
| 3610382 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.54 | 44.0 | 3.44e-01 | 90.4% | 78.8% |
| 1108143 | 3772.1.1.1 ↗ | beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR | 0.53 | 41.0 | 3.41e-01 | 83.6% | 80.3% |
| 3669346 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.53 | 42.0 | 4.12e-01 | 86.3% | 84.8% |
| 3625308 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 40.0 | 3.40e-01 | 82.2% | 74.4% |
| 4170380 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 38.0 | 3.46e-01 | 94.5% | 56.0% |
| 3370941 | 295.1.1.35 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 | 0.52 | 37.0 | 2.95e-01 | 82.2% | 33.9% |
| 4993635 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.52 | 36.0 | 2.56e-01 | 71.2% | 91.6% |
| 3219283 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.52 | 40.0 | 3.58e-01 | 86.3% | 89.1% |
| 3624597 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.51 | 40.0 | 3.68e-01 | 86.3% | 91.0% |
| 6661 | 4276.1.1.1 ↗ | a+b two layers › XisI-like › XisI-like › XisI-like › XisI | 0.51 | 41.0 | 3.72e-01 | 91.8% | 94.2% |
| 3505867 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 36.0 | 3.64e-01 | 76.7% | 85.3% |