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NC_070880.1__YP_010660669.1__PP917_gp07__00007

Bact-Vir

NC_070880.1__YP_010660669.1__PP917_gp07__00007

Identity

Accession:
NC_070880 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rountreeviridae› Andhravirus› Staphylococcus_phage_SeAlphi

TaxID: 2835941

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-154
PDB
Domain cluster: rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 69.7 4.40e-19 79.5% 93.8%
D2 high residues 166-251
PDB
Domain cluster: rep: MK448998.1__QBX31359.1__Javan636_0004__00059__D112-179
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08460.17 best SH3_5 41.8 1.30e-10 77.9% 100.0%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.95 92.0 8.64e-01 100.0% 90.9%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.92 88.0 7.42e-01 100.0% 71.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 56.0 6.29e-01 87.2% 93.9%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 56.0 6.09e-01 86.0% 88.6%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 6.29e-01 90.7% 100.0%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.74 60.0 6.17e-01 95.3% 92.6%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 6.26e-01 95.3% 93.0%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 42.0 3.65e-01 93.0% 41.9%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 42.0 3.63e-01 93.0% 43.5%
4amwA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 37.0 4.00e-01 76.7% 71.8%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.96e-01 93.0% 54.7%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 42.0 3.65e-01 93.0% 47.3%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.60 40.0 4.52e-01 100.0% 98.3%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 3.70e-01 93.0% 51.6%
1omiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 4.05e-01 93.0% 63.8%
2qcsB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.78e-01 93.0% 52.8%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 43.0 3.83e-01 93.0% 54.5%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 3.21e-01 93.0% 37.7%
3shrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.56e-01 93.0% 48.2%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.56 51.0 4.85e-01 98.8% 91.9%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.64e-01 93.0% 53.3%
4ev0D01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 41.0 3.52e-01 93.0% 47.4%
3dv8A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 41.0 3.51e-01 93.0% 47.5%
5bmnA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 31.0 3.17e-01 89.5% 54.2%
2z69B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.39e-01 93.0% 44.0%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 3.13e-01 93.0% 37.8%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.54 35.0 3.77e-01 87.2% 82.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.68e-01 80.2% 93.6%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 3.27e-01 93.0% 45.5%
8ci9C01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.51 39.0 2.71e-01 93.0% 23.9%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 38.0 3.14e-01 80.2% 86.7%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.22e-01 76.7% 91.5%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 39.0 4.03e-01 83.7% 98.8%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.50 37.0 3.43e-01 100.0% 60.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4041535 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.96 89.0 8.88e-01 96.5% 98.9%
1293364 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.92 88.0 7.42e-01 100.0% 71.0%
4032300 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.91 86.0 8.49e-01 100.0% 100.0%
1905739 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.90 81.0 8.17e-01 94.2% 98.8%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.86 62.0 6.13e-01 87.2% 71.1%
3988893 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.86 71.0 7.57e-01 88.4% 100.0%
4009391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 62.0 6.49e-01 86.0% 81.2%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 58.0 6.42e-01 86.0% 88.6%
3700744 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 69.0 6.51e-01 87.2% 97.0%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 59.0 6.56e-01 86.0% 94.0%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 59.0 6.64e-01 97.7% 100.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 61.0 6.64e-01 86.0% 97.1%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 70.0 6.91e-01 91.9% 95.6%
3715828 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 65.0 6.74e-01 87.2% 92.5%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.78 58.0 6.36e-01 88.4% 95.7%
4033059 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 62.0 6.40e-01 95.3% 95.0%
4031199 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.74 62.0 6.42e-01 95.3% 96.2%
1120123 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 6.26e-01 95.3% 96.2%
4063512 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.73 60.0 6.34e-01 98.8% 100.0%
4291404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.68e-01 86.0% 88.0%
536 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.72 62.0 6.26e-01 95.3% 93.0%
4033073 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.72 59.0 6.21e-01 95.3% 100.0%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.72 60.0 6.11e-01 89.5% 92.9%
4213326 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.72 59.0 6.11e-01 95.3% 95.0%
4682138 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 6.17e-01 94.2% 100.0%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 54.0 5.91e-01 98.8% 98.6%
1831986 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.71 61.0 6.19e-01 96.5% 94.2%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.91e-01 96.5% 87.8%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 5.14e-01 88.4% 92.3%
2325643 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.66 43.0 3.70e-01 93.0% 42.2%
4614716 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.61 47.0 5.06e-01 86.0% 100.0%
4962366 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 41.0 3.72e-01 93.0% 52.2%
3210703 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 44.0 2.92e-01 79.1% 41.5%
3991151 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 39.0 3.48e-01 91.9% 48.0%
1890511 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 42.0 3.52e-01 93.0% 45.1%
2330287 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.57 39.0 3.07e-01 93.0% 32.8%
5034351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 35.0 4.14e-01 91.9% 96.4%
5035567 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.57 30.0 3.31e-01 94.2% 60.9%
4577896 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 39.0 3.66e-01 91.9% 58.3%
5014865 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.87e-01 83.7% 77.4%
3971924 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.55 32.0 3.31e-01 90.7% 59.5%
5025662 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 29.0 2.99e-01 88.4% 52.5%
3183108 4.1.1.69 ↗ beta barrels › SH3 › SH3 › SH3 › Clr2 0.54 49.0 3.80e-01 100.0% 76.8%
3518895 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.53 36.0 3.50e-01 72.1% 74.0%
3517193 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.52 36.0 3.48e-01 72.1% 74.0%
5064269 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 30.0 3.02e-01 90.7% 55.3%