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NC_070882.1__YP_010660765.1__PP933_gp025__00025

Bact-Vir

NC_070882.1__YP_010660765.1__PP933_gp025__00025

Identity

Accession:
NC_070882 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Pawinskivirus› Pseudomonas_phage_vB_PaeM_PS119XW

TaxID: 2601632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-70
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 51.0 4.11e-01 79.0% 87.0%
1vwxd00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.67 58.0 4.89e-01 98.4% 83.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.62 42.0 3.78e-01 71.0% 56.0%
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.58 49.0 4.26e-01 98.4% 82.5%
3q6bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 39.0 3.73e-01 72.6% 94.6%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 39.0 3.61e-01 72.6% 95.2%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 42.0 3.83e-01 82.3% 76.2%
4k3bA05 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 39.0 3.71e-01 79.0% 89.9%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.81e-01 83.9% 79.0%
1dg3A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.06e-01 98.4% 34.2%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.53 45.0 4.14e-01 98.4% 81.0%
4bjjA00 3.30.200.160 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › TFIIIC, subcomplex tauA, subunit Sfc1, barrel domain 0.53 41.0 3.51e-01 87.1% 75.5%
6s2vC02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 43.0 3.34e-01 91.9% 49.7%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 41.0 3.82e-01 87.1% 82.1%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.51e-01 93.5% 85.6%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 35.0 3.33e-01 88.7% 59.0%
4cz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.77e-01 80.6% 65.9%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 37.0 3.48e-01 82.3% 94.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3825581 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.68 56.0 4.73e-01 95.2% 88.1%
3210538 259.1.1.2 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.65 54.0 4.62e-01 100.0% 82.3%
3907851 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.62 45.0 2.91e-01 77.4% 70.5%
3281177 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 46.0 3.28e-01 80.6% 82.7%
3901459 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 2.53e-01 100.0% 7.2%
3488528 221.1.1.163 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GRHL1_C 0.60 49.0 4.36e-01 95.2% 89.5%
4809699 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.58 42.0 4.19e-01 77.4% 80.0%
5053703 2498.1.1.35 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.58 40.0 2.90e-01 72.6% 93.7%
4241886 2004.1.1.133 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHD3_GTPase 0.56 47.0 3.14e-01 98.4% 33.3%
3494818 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.55 43.0 2.91e-01 85.5% 29.6%
5073160 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 44.0 3.56e-01 91.9% 57.7%
3839743 102.1.1.28 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.54 45.0 3.27e-01 95.2% 34.4%
3575511 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.53 40.0 3.57e-01 83.9% 63.2%
5031565 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.53 45.0 3.65e-01 100.0% 85.4%
1124104 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.52 40.0 3.77e-01 83.9% 74.7%
4163838 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.52 38.0 3.69e-01 82.3% 93.3%
4407965 2007.1.1.12 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Shikimate_dh_N 0.51 43.0 3.68e-01 96.8% 99.0%
None — 0.51 38.0 2.69e-01 80.6% 61.0%
3703078 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.97e-01 100.0% 33.3%
3907949 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.50 41.0 2.86e-01 100.0% 28.8%