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NC_070882.1__YP_010660813.1__PP933_gp073__00073

Bact-Vir

NC_070882.1__YP_010660813.1__PP933_gp073__00073

Identity

Accession:
NC_070882 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Pawinskivirus› Pseudomonas_phage_vB_PaeM_PS119XW

TaxID: 2601632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-89
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.76 53.0 5.77e-01 76.7% 91.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.72 50.0 5.52e-01 73.3% 92.6%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.68 48.0 5.03e-01 73.3% 80.5%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.68 41.0 4.35e-01 100.0% 67.5%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.67 46.0 4.52e-01 95.3% 66.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.64 41.0 4.65e-01 80.2% 87.5%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.64 40.0 4.35e-01 100.0% 74.3%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.63 45.0 3.91e-01 74.4% 78.6%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 48.0 5.12e-01 84.9% 100.0%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 35.0 3.64e-01 96.5% 57.8%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 47.0 4.60e-01 80.2% 90.4%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 43.0 4.73e-01 72.1% 94.1%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 51.0 4.58e-01 95.3% 87.8%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.59 41.0 4.02e-01 76.7% 67.0%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.57 49.0 4.76e-01 94.2% 91.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.56 50.0 4.77e-01 100.0% 84.3%
2qgnA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.51 41.0 4.26e-01 88.4% 100.0%
3dkxA02 1.10.10.1480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Plasmid replication protein 0.51 29.0 3.29e-01 100.0% 73.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036615 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.81 65.0 6.29e-01 87.2% 77.9%
3961296 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.78 70.0 6.84e-01 97.7% 88.3%
3602986 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.77 61.0 5.98e-01 87.2% 77.9%
3529707 4.1.1.453 ↗ beta barrels › SH3 › SH3 › SH3 › HR1_TOCA 0.75 55.0 5.36e-01 76.7% 72.6%
1710813 6158.1.1.1 ↗ alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin_FG2 0.72 62.0 6.31e-01 94.2% 97.6%
3830835 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 51.0 4.60e-01 76.7% 58.3%
4009623 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.69 45.0 5.07e-01 84.9% 87.7%
3955629 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.68 60.0 5.67e-01 94.2% 82.0%
3597506 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.67 51.0 5.36e-01 83.7% 94.7%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.66 59.0 4.89e-01 97.7% 96.0%
3930829 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 47.0 5.01e-01 98.8% 90.7%
1164229 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.62 45.0 5.04e-01 76.7% 100.0%
4961508 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 50.0 5.26e-01 89.5% 100.0%
3861615 150.1.1.190 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › SAP130_C 0.62 54.0 5.13e-01 98.8% 81.0%
3848917 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.61 46.0 4.65e-01 84.9% 80.0%
4572974 3922.1.1.79 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SAP130_C 0.60 54.0 4.82e-01 100.0% 72.2%
3462288 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 52.0 5.14e-01 96.5% 88.9%
3858927 3922.1.1.130 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › TRIM_CC 0.55 50.0 4.38e-01 100.0% 71.2%