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NC_070882.1__YP_010660941.1__PP933_gp201__00201
Bact-VirNC_070882.1__YP_010660941.1__PP933_gp201__00201
Identity
- Accession:
- NC_070882 ↗
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Pawinskivirus›
Pseudomonas_phage_vB_PaeM_PS119XW
TaxID: 2601632
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-120
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5t17A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.66 | 45.0 | 5.02e-01 | 76.5% | 94.1% |
| 2f4pA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 34.0 | 3.30e-01 | 72.2% | 44.8% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 42.0 | 4.26e-01 | 74.8% | 85.5% |
| 3rwnB00 | 2.60.120.1120 | Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob | 0.56 | 41.0 | 3.74e-01 | 76.5% | 77.9% |
| 1k25B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 44.0 | 3.27e-01 | 87.0% | 63.8% |
| 2vdrB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.54 | 41.0 | 3.74e-01 | 99.1% | 60.1% |
| 7p0eA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 4.03e-01 | 76.5% | 93.9% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 41.0 | 3.00e-01 | 87.0% | 95.8% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 34.0 | 3.65e-01 | 73.9% | 81.2% |
| 3v10A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 44.0 | 4.14e-01 | 99.1% | 86.3% |
| 4b7lA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.92e-01 | 76.5% | 90.0% |
| 5jtwA03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 37.0 | 3.59e-01 | 76.5% | 92.1% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.50 | 39.0 | 3.62e-01 | 83.5% | 77.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2573463 | 302.3.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein | 0.65 | 48.0 | 5.33e-01 | 94.8% | 100.0% |
| 3948410 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.65 | 44.0 | 4.91e-01 | 77.4% | 90.0% |
| 3824515 | 327.11.2.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 | 0.64 | 47.0 | 5.03e-01 | 77.4% | 91.0% |
| 3719500 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.63 | 56.0 | 3.88e-01 | 100.0% | 73.0% |
| 3594424 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 56.0 | 3.88e-01 | 100.0% | 73.7% |
| 5070959 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 41.0 | 4.41e-01 | 74.8% | 89.5% |
| 3593442 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 41.0 | 4.33e-01 | 100.0% | 84.8% |
| 5056082 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.55 | 48.0 | 4.97e-01 | 95.7% | 100.0% |
| 3786844 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 3.83e-01 | 74.8% | 83.2% |
| 4089330 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.98e-01 | 100.0% | 67.6% |
| 3928609 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.54 | 35.0 | 3.59e-01 | 74.8% | 66.1% |
| 3877984 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 4.15e-01 | 86.1% | 100.0% |
| 3792957 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 38.0 | 3.54e-01 | 74.8% | 58.6% |
| 4932512 | 328.9.1.3 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › OapB | 0.53 | 34.0 | 3.46e-01 | 70.4% | 65.5% |
| 4305706 | 322.1.1.4 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PF27497 | 0.53 | 44.0 | 3.94e-01 | 94.8% | 63.0% |
| 3924362 | 329.1.1.0 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain | 0.51 | 38.0 | 3.87e-01 | 79.1% | 81.7% |
| 3259434 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.81e-01 | 74.8% | 93.0% |
D2
high
residues 133-210