←Back to structures

NC_070882.1__YP_010661098.1__PP933_gp358__00358

Bact-Vir

NC_070882.1__YP_010661098.1__PP933_gp358__00358

Identity

Accession:
NC_070882 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Pawinskivirus› Pseudomonas_phage_vB_PaeM_PS119XW

TaxID: 2601632

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-112
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qltA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 39.0 4.81e-01 85.5% 100.0%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 42.0 4.49e-01 84.5% 75.3%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 45.0 4.44e-01 91.8% 73.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 29.0 3.25e-01 84.5% 61.2%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 36.0 4.21e-01 71.8% 100.0%
2wzfA03 1.20.120.990 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Glycosyltransferase family 88, C-terminal domain 0.55 42.0 4.12e-01 100.0% 73.4%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 43.0 4.13e-01 91.8% 70.5%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.55 40.0 3.36e-01 76.4% 44.6%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.54 31.0 3.53e-01 100.0% 78.2%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.53 28.0 2.95e-01 81.8% 52.4%
7w5gA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 39.0 2.79e-01 79.1% 91.8%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.52 37.0 4.05e-01 88.2% 91.1%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.52 36.0 3.45e-01 70.0% 73.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.52 36.0 3.82e-01 92.7% 83.5%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 42.0 3.99e-01 98.2% 74.3%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 36.0 3.29e-01 73.6% 89.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3352321 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 42.0 4.22e-01 90.0% 65.5%
4945282 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 42.0 4.19e-01 85.5% 64.0%
5000182 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.63 40.0 4.08e-01 79.1% 65.7%
3378930 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.63 43.0 4.12e-01 86.4% 60.8%
4961655 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.63 40.0 4.23e-01 82.7% 73.7%
5042605 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.62 40.0 4.27e-01 81.8% 75.3%
3204144 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.62 41.0 3.95e-01 81.8% 57.7%
4498700 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 42.0 4.40e-01 70.0% 85.0%
3742618 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.62 40.0 4.07e-01 83.6% 66.7%
3488467 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 44.0 4.34e-01 88.2% 70.4%
3273891 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 41.0 4.03e-01 83.6% 65.8%
5026540 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 41.0 4.22e-01 82.7% 75.2%
4962267 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 39.0 4.20e-01 90.0% 83.3%
4026128 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.51 35.0 3.22e-01 70.9% 80.7%
4013771 109.3.1.179 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF7708 0.50 42.0 3.34e-01 92.7% 57.0%