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NC_070883.1__YP_010661253.1__PP934_gp124__00124

Bact-Vir

Identity

Accession:: NC_070883 ↗
Kingdom:: phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Trinifflemingvirus› Rhizobium_phage_RHph_Y68

TaxID: 2509787

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-94

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4g6tB00	6.10.20.120	Special › Helix non-globular › Arc Repressor Mutant, subunit A ›	0.74	30.0	3.26e-01	78.3%	46.5%
3sjrA00	1.10.132.90	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.63	48.0	4.19e-01	81.9%	92.1%
8eg0B01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.60	53.0	3.52e-01	100.0%	64.6%
4mbsA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.59	52.0	3.47e-01	100.0%	61.6%
2fsjA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.57	39.0	3.34e-01	89.2%	43.5%
2yykA01	1.10.3140.10	Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1	0.56	42.0	3.60e-01	80.7%	49.6%
2jroA01	3.30.1910.10	Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain	0.52	36.0	3.98e-01	72.3%	100.0%
1u0mA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.52	36.0	3.07e-01	73.5%	61.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4607845	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.74	56.0	3.59e-01	78.3%	44.8%
3991544	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.72	50.0	4.73e-01	85.5%	60.0%
3463832	386.1.1.334 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Utp11	0.72	52.0	4.44e-01	86.7%	48.5%
3478507	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.65	50.0	3.28e-01	83.1%	19.4%
4295958	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.64	45.0	3.43e-01	81.9%	31.0%
4503571	223.1.1.83 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_13	0.59	40.0	2.84e-01	80.7%	24.1%
3899139	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.56	49.0	3.32e-01	96.4%	61.6%
4059884	298.1.1.24 ↗	a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3	0.56	42.0	3.17e-01	85.5%	80.4%
4302854	7510.1.1.1 ↗	a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh	0.52	36.0	3.07e-01	73.5%	55.0%