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NC_070885.1__YP_010661659.1__PP936_gp021__00021
Bact-VirNC_070885.1__YP_010661659.1__PP936_gp021__00021
Identity
- Accession:
- NC_070885 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Trinifflemingvirus›
Rhizobium_phage_RHph_I1_9
TaxID: 2509729
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-69
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jdiG01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.79 | 64.0 | 6.54e-01 | 87.3% | 100.0% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.74 | 61.0 | 4.99e-01 | 88.9% | 61.9% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.74 | 65.0 | 6.24e-01 | 96.8% | 88.7% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 65.0 | 6.10e-01 | 98.4% | 85.7% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 60.0 | 5.60e-01 | 90.5% | 78.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 57.0 | 5.89e-01 | 84.1% | 94.8% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 55.0 | 5.42e-01 | 82.5% | 88.2% |
| 6cgaC02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 61.0 | 5.70e-01 | 96.8% | 89.7% |
| 4m52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 51.0 | 3.41e-01 | 76.2% | 25.2% |
| 4gczA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 58.0 | 5.83e-01 | 92.1% | 95.4% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 61.0 | 5.79e-01 | 100.0% | 87.8% |
| 2az0B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 56.0 | 5.45e-01 | 92.1% | 85.9% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 51.0 | 5.26e-01 | 84.1% | 86.7% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.65 | 47.0 | 4.49e-01 | 79.4% | 64.5% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.64 | 54.0 | 4.79e-01 | 93.7% | 75.8% |
| 4bf9A02 | 1.20.225.30 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Dihydrouridine synthase, C-terminal recognition domain | 0.62 | 45.0 | 4.32e-01 | 77.8% | 93.2% |
| 1rsoA01 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 44.0 | 4.80e-01 | 82.5% | 96.1% |
| 3cb2A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 47.0 | 4.79e-01 | 93.7% | 96.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284621 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.78 | 67.0 | 6.03e-01 | 92.1% | 69.4% |
| 3282761 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.77 | 64.0 | 5.53e-01 | 90.5% | 61.1% |
| 3642682 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.76 | 64.0 | 5.18e-01 | 92.1% | 86.1% |
| 4941252 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.75 | 54.0 | 5.42e-01 | 76.2% | 81.5% |
| 2518028 | 5044.1.1.1 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like › Ycf9 | 0.74 | 62.0 | 6.29e-01 | 92.1% | 93.4% |
| 197440 | 5055.1.1.2 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › DIP0205-like_N | 0.74 | 65.0 | 6.21e-01 | 96.8% | 87.5% |
| 3192846 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.74 | 66.0 | 5.17e-01 | 96.8% | 49.6% |
| 3781140 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 50.0 | 4.24e-01 | 71.4% | 43.8% |
| 3585987 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 62.0 | 5.83e-01 | 92.1% | 89.3% |
| 3544536 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 64.0 | 5.40e-01 | 98.4% | 98.1% |
| 5047588 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.72 | 57.0 | 6.03e-01 | 85.7% | 100.0% |
| 3489764 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.71 | 61.0 | 5.15e-01 | 96.8% | 57.1% |
| 3256613 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.71 | 63.0 | 4.10e-01 | 100.0% | 29.3% |
| 3961347 | 150.5.1.53 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE | 0.69 | 59.0 | 5.28e-01 | 92.1% | 69.4% |
| 3927846 | 109.4.1.1948 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle | 0.68 | 59.0 | 3.92e-01 | 96.8% | 29.6% |
| 3505189 | 109.4.1.594 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C | 0.65 | 55.0 | 3.81e-01 | 98.4% | 69.1% |
D2
high
residues 86-178
Domain cluster:
rep: NC_007902.1__YP_516208.1__SGPHI_0030__00030__D42-114
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04352.19 best | ProQ | 65.0 | 7.90e-18 | 100.0% | 79.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mw6B00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.90 | 74.0 | 7.38e-01 | 97.8% | 84.0% |
| 7rgsA01 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.90 | 81.0 | 7.99e-01 | 96.8% | 89.8% |
| 1dvoA00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.87 | 80.0 | 6.61e-01 | 100.0% | 59.2% |
| 6s10A01 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.78 | 72.0 | 6.95e-01 | 100.0% | 91.2% |
| 3lw7A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 42.0 | 3.50e-01 | 75.3% | 92.4% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 36.0 | 3.10e-01 | 74.2% | 38.4% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 39.0 | 3.25e-01 | 71.0% | 87.2% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 33.0 | 3.28e-01 | 86.0% | 60.8% |
| 4fleA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 3.31e-01 | 92.5% | 79.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4044177 | 505.1.1.1 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ | 0.93 | 87.0 | 7.54e-01 | 100.0% | 69.2% |
| 3970934 | 505.1.1.1 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ | 0.93 | 85.0 | 7.95e-01 | 100.0% | 80.9% |
| 119496 | 505.1.1.1 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ | 0.90 | 74.0 | 6.68e-01 | 98.9% | 65.6% |
| 3000491 | 505.1.1.1 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ | 0.90 | 82.0 | 7.32e-01 | 97.8% | 72.4% |
| 3945492 | 505.1.1.1 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ | 0.89 | 81.0 | 7.47e-01 | 100.0% | 78.3% |
| 3220 | 505.1.1.2 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ,FinO_N | 0.87 | 80.0 | 6.61e-01 | 100.0% | 59.2% |
| 2634135 | 505.1.1.1 ↗ | alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ | 0.80 | 73.0 | 6.60e-01 | 98.9% | 77.9% |
| 3607702 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.56 | 32.0 | 3.91e-01 | 79.6% | 92.7% |
| 3427551 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.75e-01 | 76.3% | 80.0% |
| 3404898 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.50 | 33.0 | 3.24e-01 | 84.9% | 60.2% |