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NC_070885.1__YP_010661737.1__PP936_gp099__00099

Bact-Vir

NC_070885.1__YP_010661737.1__PP936_gp099__00099

Identity

Accession:
NC_070885 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Trinifflemingvirus› Rhizobium_phage_RHph_I1_9

TaxID: 2509729

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-94
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 52.0 4.58e-01 74.1% 82.5%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 52.0 4.12e-01 79.0% 72.2%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 50.0 3.12e-01 74.1% 30.5%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 49.0 4.39e-01 74.1% 92.1%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 54.0 3.48e-01 85.2% 94.9%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 47.0 4.11e-01 71.6% 96.7%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 51.0 4.25e-01 79.0% 62.2%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.67 51.0 4.18e-01 81.5% 63.3%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 49.0 4.10e-01 77.8% 62.3%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.66 45.0 3.90e-01 70.4% 85.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.66 47.0 4.09e-01 74.1% 76.6%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 4.18e-01 77.8% 56.6%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 48.0 4.15e-01 77.8% 64.6%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 49.0 4.06e-01 79.0% 61.0%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.65 50.0 4.15e-01 81.5% 67.8%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 48.0 4.09e-01 79.0% 62.7%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 45.0 3.02e-01 74.1% 40.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.75e-01 72.8% 68.7%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.63 50.0 3.35e-01 86.4% 92.1%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 3.08e-01 80.2% 31.4%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 50.0 3.71e-01 87.7% 77.6%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 48.0 3.38e-01 85.2% 95.1%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.60 45.0 3.84e-01 82.7% 67.1%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 44.0 3.78e-01 77.8% 61.5%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.60 42.0 4.01e-01 82.7% 61.9%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.38e-01 85.2% 68.6%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 47.0 4.22e-01 86.4% 66.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 45.0 3.05e-01 84.0% 86.0%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 40.0 2.78e-01 70.4% 90.7%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 46.0 4.61e-01 85.2% 85.4%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 2.99e-01 84.0% 64.9%
1gv9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.36e-01 92.6% 79.8%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.55 47.0 4.02e-01 92.6% 77.2%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.55 40.0 3.62e-01 79.0% 66.9%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 46.0 3.81e-01 90.1% 59.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.73e-01 86.4% 68.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 37.0 3.60e-01 76.5% 64.0%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 47.0 3.57e-01 100.0% 82.8%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 47.0 4.36e-01 97.5% 81.7%
3zwfA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 46.0 3.32e-01 100.0% 87.6%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.57e-01 90.1% 79.9%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 39.0 2.45e-01 80.2% 95.6%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.37e-01 98.8% 93.6%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 45.0 3.61e-01 100.0% 77.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 49.0 3.18e-01 71.6% 21.6%
3062889 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 52.0 3.99e-01 79.0% 67.2%
3386462 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.68 49.0 4.54e-01 76.5% 61.0%
1890003 274.1.1.18 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Tt1219-like 0.67 48.0 3.58e-01 74.1% 38.5%
3258731 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.66 50.0 4.19e-01 81.5% 70.0%
3822639 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 51.0 3.40e-01 85.2% 88.8%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 49.0 4.64e-01 79.0% 88.4%
3475877 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.65 49.0 3.97e-01 79.0% 58.0%
4176188 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.65 51.0 3.51e-01 86.4% 87.1%
3227515 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 48.0 4.09e-01 79.0% 64.3%
3581297 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.64 49.0 3.60e-01 82.7% 36.7%
3487199 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 46.0 4.19e-01 86.4% 57.4%
3705162 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 46.0 3.13e-01 77.8% 55.7%
4386896 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 43.0 2.94e-01 70.4% 42.2%
3399367 9.2.1.5 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 0.62 44.0 4.21e-01 86.4% 63.2%
2336349 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 43.0 4.18e-01 71.6% 97.8%
3981710 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.61 43.0 2.98e-01 71.6% 39.2%
None — 0.61 49.0 3.43e-01 91.4% 82.7%
3509038 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 44.0 4.10e-01 75.3% 64.0%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.61 46.0 3.78e-01 81.5% 69.3%
4024468 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 3.60e-01 87.7% 80.5%
4108772 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.59 45.0 4.67e-01 100.0% 88.0%
3332798 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 48.0 3.79e-01 92.6% 90.9%
5025494 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 43.0 3.28e-01 79.0% 84.4%
3623290 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 40.0 4.01e-01 100.0% 71.8%
3457141 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 43.0 2.89e-01 81.5% 88.4%
4030162 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 47.0 2.73e-01 95.1% 16.5%
3823899 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 45.0 3.20e-01 88.9% 36.1%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 44.0 3.35e-01 87.7% 37.0%
4883226 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.55 40.0 3.87e-01 77.8% 92.5%
164541 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.55 40.0 3.62e-01 79.0% 66.9%
3849049 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.55 49.0 3.41e-01 97.5% 76.9%
3401959 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.53 43.0 3.16e-01 92.6% 74.3%
3823102 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 39.0 3.25e-01 86.4% 47.1%
3305785 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 43.0 2.95e-01 97.5% 52.8%
2491500 5.1.7.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR_6, Sortilin-Vps10 0.51 42.0 2.68e-01 98.8% 23.8%