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NC_070885.1__YP_010661756.1__PP936_gp118__00118

Bact-Vir

NC_070885.1__YP_010661756.1__PP936_gp118__00118

Identity

Accession:
NC_070885 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Trinifflemingvirus› Rhizobium_phage_RHph_I1_9

TaxID: 2509729

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-114
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.63 41.0 3.89e-01 98.2% 54.0%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.62 41.0 3.70e-01 85.7% 48.4%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 29.0 3.71e-01 88.4% 82.3%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.57 41.0 4.51e-01 75.9% 100.0%
6dddH00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.55 39.0 4.18e-01 72.3% 100.0%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.55 39.0 4.21e-01 73.2% 100.0%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 37.0 3.48e-01 91.1% 56.0%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.54e-01 82.1% 76.2%
3cnrB00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 37.0 4.00e-01 82.1% 93.5%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.44e-01 76.8% 82.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4156192 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.61 42.0 2.84e-01 71.4% 97.9%
3583879 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 44.0 3.20e-01 85.7% 28.0%
3349603 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 38.0 4.41e-01 83.9% 91.0%
4089549 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 43.0 4.63e-01 75.0% 100.0%
4597893 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 43.0 4.51e-01 76.8% 99.0%
4118502 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 42.0 4.51e-01 75.0% 100.0%
4065495 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.57 42.0 4.43e-01 76.8% 98.0%
3510186 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.57 41.0 4.47e-01 75.9% 100.0%
3924122 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 42.0 3.01e-01 83.9% 26.1%
4323001 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 43.0 4.55e-01 81.2% 100.0%
4232299 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 40.0 4.28e-01 74.1% 100.0%
4554927 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 41.0 4.29e-01 76.8% 100.0%
4069101 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 41.0 4.27e-01 76.8% 97.0%
4618294 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 41.0 4.35e-01 76.8% 100.0%
3396363 3775.1.1.1 ↗ beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.54 40.0 2.66e-01 77.7% 80.9%
3945543 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 38.0 4.20e-01 86.6% 97.6%
4672167 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 42.0 4.52e-01 86.6% 100.0%
4452931 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 42.0 4.31e-01 85.7% 97.1%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.76e-01 73.2% 87.6%
3657233 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 39.0 3.23e-01 80.4% 57.1%
3505711 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.52 34.0 3.84e-01 81.2% 88.2%
4334982 3775.1.1.1 ↗ beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.50 37.0 2.55e-01 77.7% 83.4%