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NC_070885.1__YP_010661804.1__PP936_gp166__00166

Bact-Vir

NC_070885.1__YP_010661804.1__PP936_gp166__00166

Identity

Accession:
NC_070885 ↗
Kingdom:
phage

Quality

64.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Trinifflemingvirus› Rhizobium_phage_RHph_I1_9

TaxID: 2509729

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
D2 high residues 77-130
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 60.0 5.70e-01 100.0% 76.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 6.04e-01 100.0% 94.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 5.90e-01 100.0% 90.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 5.81e-01 100.0% 89.4%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.63e-01 100.0% 91.2%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 62.0 5.50e-01 100.0% 71.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 62.0 5.80e-01 100.0% 83.1%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 60.0 5.95e-01 100.0% 93.0%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 4.97e-01 100.0% 55.1%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 60.0 5.75e-01 100.0% 88.9%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.22e-01 100.0% 65.9%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 6.11e-01 100.0% 98.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.56e-01 100.0% 80.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 61.0 5.45e-01 100.0% 81.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 61.0 5.97e-01 100.0% 98.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 60.0 5.72e-01 100.0% 92.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 61.0 4.68e-01 100.0% 47.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 60.0 5.94e-01 100.0% 94.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 59.0 5.76e-01 100.0% 96.6%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.03e-01 100.0% 64.3%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 59.0 5.83e-01 100.0% 96.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 58.0 5.43e-01 100.0% 90.9%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.34e-01 100.0% 52.8%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.55e-01 100.0% 90.0%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.03e-01 100.0% 67.5%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.51e-01 100.0% 91.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.28e-01 100.0% 79.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.28e-01 100.0% 91.0%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.40e-01 100.0% 91.5%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.28e-01 94.4% 100.0%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 5.11e-01 100.0% 96.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.38e-01 100.0% 76.7%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 51.0 4.65e-01 100.0% 86.5%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.27e-01 100.0% 66.3%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.57 47.0 3.42e-01 100.0% 94.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.22e-01 100.0% 75.7%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.60e-01 92.6% 67.3%
3tuiD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 38.0 2.64e-01 81.5% 71.1%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.36e-01 90.7% 71.3%
4dguA02 2.60.40.2670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 2.81e-01 83.3% 34.6%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3475881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.81e-01 100.0% 72.9%
3759402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 67.0 6.26e-01 100.0% 89.2%
3509345 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 64.0 5.05e-01 96.3% 54.3%
3510029 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 6.11e-01 96.3% 95.0%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 64.0 5.87e-01 100.0% 87.1%
3885695 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 65.0 5.62e-01 100.0% 67.5%
3243949 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 64.0 6.20e-01 100.0% 93.3%
3398175 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 64.0 5.98e-01 100.0% 86.2%
3924337 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 64.0 6.17e-01 100.0% 93.3%
3561013 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 64.0 5.67e-01 100.0% 72.0%
3908332 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 63.0 5.93e-01 100.0% 86.2%
3747208 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 64.0 5.51e-01 100.0% 67.5%
3919980 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 64.0 5.98e-01 100.0% 83.1%
3573775 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 63.0 5.92e-01 100.0% 83.1%
3888222 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 64.0 5.79e-01 100.0% 77.1%
3231675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 63.0 5.75e-01 100.0% 80.0%
3750163 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 63.0 5.76e-01 100.0% 77.1%
3548244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 63.0 6.08e-01 100.0% 90.0%
3876823 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 62.0 5.57e-01 100.0% 72.0%
3480351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 63.0 5.57e-01 100.0% 77.3%
3575263 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 63.0 5.90e-01 100.0% 83.1%
3755099 604.1.1.97 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.69 63.0 5.35e-01 100.0% 63.5%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.69e-01 100.0% 80.0%
3516244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.41e-01 100.0% 67.5%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.43e-01 100.0% 67.5%
3503782 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 63.0 6.07e-01 100.0% 90.0%
1699772 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.47e-01 100.0% 70.1%
3748846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.84e-01 100.0% 83.1%
4119802 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 62.0 5.83e-01 100.0% 83.1%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 6.01e-01 100.0% 90.0%
3522910 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 62.0 5.53e-01 100.0% 74.7%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 61.0 6.14e-01 98.1% 96.4%
3554162 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.86e-01 100.0% 83.1%
3217112 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.67e-01 100.0% 77.1%
3886646 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.81e-01 100.0% 83.1%
3895391 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.38e-01 100.0% 67.5%
3846069 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.84e-01 100.0% 83.1%
3503780 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 62.0 5.79e-01 100.0% 83.1%
3872095 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 61.0 6.13e-01 98.1% 96.4%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.82e-01 100.0% 83.1%
3563539 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.67e-01 100.0% 77.1%
3270547 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.84e-01 100.0% 83.1%
3625909 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 61.0 5.35e-01 100.0% 67.5%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 61.0 5.99e-01 100.0% 93.1%
3487686 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.22e-01 100.0% 63.5%
3391702 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.34e-01 100.0% 67.5%
3585447 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 61.0 5.31e-01 100.0% 67.5%
3535437 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 61.0 5.88e-01 100.0% 90.0%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 61.0 5.11e-01 100.0% 60.0%
3217113 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 60.0 5.63e-01 98.1% 81.5%
3904253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 61.0 5.71e-01 100.0% 86.2%
3769245 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 60.0 5.39e-01 100.0% 74.7%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 60.0 5.08e-01 100.0% 62.9%
25699 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 61.0 6.06e-01 100.0% 98.2%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 61.0 5.69e-01 100.0% 98.5%
2834765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 60.0 5.56e-01 100.0% 78.3%
3581631 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 59.0 5.62e-01 100.0% 90.8%
3399284 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 60.0 5.69e-01 100.0% 83.1%
3259033 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 60.0 5.82e-01 100.0% 90.0%
3542245 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 60.0 5.49e-01 100.0% 77.1%
423468 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 60.0 5.11e-01 100.0% 63.5%
3862537 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.67 51.0 5.32e-01 98.1% 92.0%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 60.0 5.46e-01 100.0% 81.4%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.66 52.0 4.29e-01 100.0% 47.0%
3269589 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 59.0 5.45e-01 100.0% 77.1%
3900208 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 60.0 5.65e-01 100.0% 84.4%
1263753 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 59.0 5.74e-01 100.0% 93.3%
3270519 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 59.0 5.53e-01 100.0% 86.2%
165220 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 58.0 5.27e-01 100.0% 76.7%
2137275 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 58.0 5.66e-01 100.0% 89.8%
165657 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 57.0 5.35e-01 100.0% 80.6%
2636173 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 55.0 5.23e-01 100.0% 83.1%
4460255 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.53 39.0 4.03e-01 100.0% 86.0%
3994648 11.1.7.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like 0.52 38.0 2.65e-01 85.2% 82.6%
5063665 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.52 37.0 3.98e-01 100.0% 95.6%
5001806 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.51 37.0 3.89e-01 100.0% 89.6%
4083057 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.51 37.0 3.85e-01 100.0% 86.0%