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NC_070885.1__YP_010661872.1__PP936_gp234__00234
Bact-VirNC_070885.1__YP_010661872.1__PP936_gp234__00234
Identity
- Accession:
- NC_070885 ↗
- Kingdom:
- phage
Quality
94.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Trinifflemingvirus›
Rhizobium_phage_RHph_I1_9
TaxID: 2509729
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-70
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.63 | 38.0 | 2.98e-01 | 86.8% | 28.4% |
| 1uu1B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 45.0 | 3.52e-01 | 83.8% | 58.0% |
| 2gb5A01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.55 | 37.0 | 2.90e-01 | 79.4% | 35.3% |
| 5cw7B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.54 | 38.0 | 3.41e-01 | 73.5% | 60.6% |
| 1qr0A02 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.50 | 36.0 | 3.11e-01 | 76.5% | 49.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5006228 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.64 | 47.0 | 3.55e-01 | 76.5% | 64.0% |
| 4324611 | 2008.1.1.166 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XcyI | 0.61 | 53.0 | 3.33e-01 | 92.6% | 70.8% |
| 3964222 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 46.0 | 3.39e-01 | 80.9% | 49.4% |
| 3732433 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.52 | 36.0 | 2.86e-01 | 73.5% | 41.3% |