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NC_070887.1__YP_010662316.1__PP938_gp166__00166

Bact-Vir

NC_070887.1__YP_010662316.1__PP938_gp166__00166

Identity

Accession:
NC_070887 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-67
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lo0A00 1.10.286.70 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain 0.77 49.0 5.70e-01 71.9% 93.3%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 55.0 5.88e-01 90.6% 100.0%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 55.0 5.90e-01 90.6% 100.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.86e-01 92.2% 62.5%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.70 57.0 5.87e-01 95.3% 95.1%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.69 48.0 3.46e-01 71.9% 65.7%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.68 58.0 5.56e-01 95.3% 89.0%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.67 40.0 3.96e-01 81.2% 57.6%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.76e-01 87.5% 76.7%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 5.08e-01 90.6% 90.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.16e-01 92.2% 47.6%
1iyrA00 1.10.1490.10 Mainly Alpha › Orthogonal Bundle › Dna Fragmentation Factor Alpha Subunit; Chain: A; › C-terminal domain of DFF45/ICAD (DFF-C domain) 0.66 53.0 4.92e-01 95.3% 68.7%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 49.0 4.60e-01 93.8% 66.3%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.53e-01 84.4% 73.8%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 5.31e-01 100.0% 98.3%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.65 45.0 4.22e-01 71.9% 60.5%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 42.0 3.40e-01 78.1% 33.6%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 44.0 3.75e-01 73.4% 52.4%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.72e-01 100.0% 81.2%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 50.0 4.41e-01 92.2% 76.5%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.62 46.0 4.51e-01 84.4% 72.5%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 49.0 4.54e-01 87.5% 95.1%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.67e-01 87.5% 98.6%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.85e-01 100.0% 90.5%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.47e-01 93.8% 81.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 40.0 3.61e-01 70.3% 95.5%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 39.0 3.87e-01 73.4% 66.2%
2yn7A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.58 42.0 2.91e-01 78.1% 23.8%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.19e-01 100.0% 71.1%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.56e-01 87.5% 49.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.38e-01 100.0% 77.3%
4aciA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 44.0 3.34e-01 90.6% 34.1%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.55 46.0 3.59e-01 96.9% 60.5%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.55 43.0 3.85e-01 82.8% 73.6%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 42.0 4.29e-01 89.1% 81.2%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 43.0 4.12e-01 85.9% 74.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.54 42.0 4.23e-01 82.8% 85.9%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 46.0 4.04e-01 95.3% 92.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 40.0 4.01e-01 95.3% 80.6%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 36.0 3.96e-01 76.6% 100.0%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.53 47.0 3.83e-01 100.0% 84.9%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 37.0 3.79e-01 100.0% 76.6%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.52 46.0 3.98e-01 100.0% 64.4%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 47.0 4.13e-01 100.0% 91.5%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.51 41.0 3.75e-01 90.6% 88.8%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 41.0 3.64e-01 84.4% 80.5%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.51 43.0 3.95e-01 100.0% 71.6%
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 44.0 3.84e-01 98.4% 87.9%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 42.0 3.03e-01 98.4% 31.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4363995 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.79 66.0 5.06e-01 98.4% 41.4%
4936146 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 60.0 6.41e-01 81.2% 98.2%
3836074 141.1.1.4 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.78 62.0 3.82e-01 84.4% 31.3%
4600245 3640.1.1.1 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.74 57.0 5.31e-01 82.8% 77.2%
4932863 101.1.2.947 alpha arrays › HTH › HTH › winged helix domain › PF27234 0.74 64.0 6.02e-01 100.0% 80.0%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.74 63.0 6.52e-01 96.9% 100.0%
3934732 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 61.0 6.16e-01 95.3% 96.9%
3424391 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 48.0 4.57e-01 70.3% 58.7%
5003639 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.72 62.0 4.72e-01 98.4% 41.9%
3390891 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.71 60.0 5.42e-01 95.3% 100.0%
3617495 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.71 44.0 4.07e-01 81.2% 50.6%
3388840 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.70 59.0 5.35e-01 95.3% 96.7%
3582956 101.1.15.2 alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C 0.70 57.0 5.56e-01 98.4% 81.4%
5054168 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.70 42.0 4.24e-01 87.5% 60.0%
3837790 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.69 59.0 4.95e-01 95.3% 84.5%
3537310 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.69 62.0 6.17e-01 100.0% 100.0%
3451551 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.69 57.0 5.43e-01 90.6% 80.0%
3404621 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.69 57.0 5.18e-01 93.8% 100.0%
316547 101.1.15.2 alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C 0.69 53.0 5.62e-01 89.1% 100.0%
5002758 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.69 56.0 5.78e-01 90.6% 98.3%
3393967 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.68 57.0 5.08e-01 95.3% 96.8%
4325357 4973.1.1.0 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.68 50.0 4.87e-01 79.7% 72.9%
3272819 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.67 57.0 4.88e-01 98.4% 62.7%
3837701 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.67 58.0 5.79e-01 100.0% 100.0%
3391717 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.67 56.0 5.05e-01 95.3% 98.9%
4046675 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.67 54.0 5.00e-01 96.9% 69.4%
4946659 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 54.0 4.49e-01 100.0% 51.8%
3989117 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.65 50.0 4.36e-01 100.0% 54.0%
3216679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 5.20e-01 98.4% 81.3%
4976919 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.65 57.0 4.94e-01 100.0% 84.0%
4554416 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.65 45.0 3.96e-01 71.9% 52.2%
3946805 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.65 51.0 4.86e-01 92.2% 72.0%
3244958 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 5.21e-01 100.0% 90.8%
3391605 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 5.24e-01 92.2% 96.9%
1320273 101.1.10.11 alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin 0.64 53.0 4.50e-01 96.9% 55.0%
3623710 3277.2.1.1 alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.64 53.0 4.51e-01 92.2% 61.9%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.64 42.0 3.49e-01 82.8% 40.0%
4358519 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.63 42.0 3.64e-01 71.9% 44.0%
3744631 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.63 38.0 3.69e-01 70.3% 54.3%
1124142 3788.1.1.1 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR 0.63 42.0 3.72e-01 73.4% 46.9%
3246361 101.1.17.18 alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.62 56.0 5.58e-01 100.0% 100.0%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 46.0 4.11e-01 95.3% 57.0%
3788827 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.59 41.0 4.11e-01 71.9% 70.8%
3471580 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 39.0 3.72e-01 71.9% 55.0%
3894003 601.1.3.9 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 › TRC8_N 0.59 45.0 3.53e-01 81.2% 40.8%
2073547 621.1.1.2 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.58 47.0 4.77e-01 100.0% 90.8%
3896790 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.36e-01 95.3% 73.3%
3923696 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.58 40.0 3.63e-01 71.9% 54.4%
3988566 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 36.0 3.55e-01 75.0% 58.6%
4159093 5050.1.1.22 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like 0.58 46.0 3.34e-01 89.1% 74.7%
3982095 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 44.0 3.98e-01 92.2% 84.7%
3288236 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.56 46.0 4.12e-01 90.6% 90.0%
4110549 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.55 42.0 3.48e-01 81.2% 48.2%
3626769 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.52 46.0 4.06e-01 95.3% 98.9%
3596143 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.52 39.0 3.81e-01 81.2% 87.1%
3739307 604.12.1.56 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER 0.51 42.0 4.08e-01 89.1% 82.9%