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NC_070888.1__YP_010662459.1__PP939_gp051__00051
Bact-VirNC_070888.1__YP_010662459.1__PP939_gp051__00051
Identity
- Accession:
- NC_070888 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 2663232
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.66 | 36.0 | 3.55e-01 | 96.2% | 51.8% |
| 4xsgB00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.62 | 52.0 | 3.49e-01 | 94.3% | 55.1% |
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.60 | 43.0 | 4.12e-01 | 98.1% | 65.1% |
| 5di3B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 40.0 | 2.70e-01 | 71.7% | 26.5% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.58 | 48.0 | 4.59e-01 | 94.3% | 93.7% |
| 4jg2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 46.0 | 3.34e-01 | 100.0% | 57.8% |
| 2azwA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 45.0 | 3.45e-01 | 96.2% | 93.8% |
| 6aqgD02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 40.0 | 2.49e-01 | 77.4% | 58.2% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.56 | 42.0 | 3.18e-01 | 84.9% | 95.7% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.54 | 32.0 | 2.73e-01 | 100.0% | 34.4% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 45.0 | 3.62e-01 | 96.2% | 89.1% |
| 2aegA02 | 3.90.1680.20 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › | 0.54 | 43.0 | 3.21e-01 | 96.2% | 34.0% |
| 4b0eD00 | 3.10.20.410 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain | 0.53 | 37.0 | 3.12e-01 | 75.5% | 48.0% |
| 2p5zX02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.53 | 44.0 | 3.73e-01 | 100.0% | 77.3% |
| 1d5rA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 44.0 | 3.15e-01 | 100.0% | 49.4% |
| 7zhhA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 42.0 | 3.96e-01 | 88.7% | 95.5% |
| 3m9gA02 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.52 | 42.0 | 3.97e-01 | 96.2% | 82.4% |
| 6nrzA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 37.0 | 2.34e-01 | 81.1% | 59.2% |
| 3a1pB00 | 3.30.860.10 | Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15 | 0.52 | 37.0 | 3.13e-01 | 100.0% | 47.1% |
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.52 | 37.0 | 3.54e-01 | 96.2% | 63.5% |
| 2xtmA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.77e-01 | 88.7% | 46.9% |
| 2r44A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 3.22e-01 | 100.0% | 89.8% |
| 4qecA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 2.80e-01 | 100.0% | 93.5% |
| 4s3nA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 44.0 | 3.25e-01 | 98.1% | 36.1% |
| 2qdfA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 39.0 | 3.49e-01 | 90.6% | 58.4% |
| 4e3zB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 40.0 | 2.82e-01 | 100.0% | 94.7% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.51 | 37.0 | 3.38e-01 | 77.4% | 56.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949050 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.63 | 49.0 | 4.73e-01 | 86.8% | 75.0% |
| 1562728 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.62 | 52.0 | 3.49e-01 | 94.3% | 55.1% |
| 3782755 | 109.4.1.3316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29177 | 0.62 | 52.0 | 3.17e-01 | 100.0% | 14.6% |
| 1831278 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.60 | 43.0 | 4.00e-01 | 98.1% | 61.2% |
| 3935996 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.57 | 41.0 | 3.31e-01 | 77.4% | 88.6% |
| 4027082 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.56 | 38.0 | 3.24e-01 | 71.7% | 92.6% |
| 3183753 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.56 | 39.0 | 2.99e-01 | 73.6% | 78.4% |
| 4296144 | 2004.1.2.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C | 0.56 | 41.0 | 2.98e-01 | 81.1% | 85.0% |
| 4964892 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.56 | 42.0 | 3.12e-01 | 83.0% | 47.1% |
| 3249147 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 43.0 | 3.00e-01 | 88.7% | 37.4% |
| 3613411 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.55 | 45.0 | 3.43e-01 | 100.0% | 75.3% |
| 3717020 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.55 | 46.0 | 3.29e-01 | 100.0% | 78.4% |
| 4945971 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 34.0 | 2.37e-01 | 100.0% | 18.4% |
| 3577267 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.55 | 48.0 | 3.11e-01 | 100.0% | 37.1% |
| 4020058 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 43.0 | 2.93e-01 | 100.0% | 60.1% |
| 3229470 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.54 | 39.0 | 2.55e-01 | 86.8% | 97.0% |
| 3570896 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.53 | 39.0 | 2.55e-01 | 100.0% | 16.2% |
| 3337596 | 2004.1.1.150 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DRMBL | 0.53 | 42.0 | 3.28e-01 | 100.0% | 74.5% |
| 4974760 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 46.0 | 3.14e-01 | 100.0% | 88.7% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.52 | 37.0 | 3.33e-01 | 77.4% | 52.6% |
| 3873738 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.51 | 40.0 | 2.57e-01 | 88.7% | 34.6% |
| 4318504 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.51 | 43.0 | 3.11e-01 | 100.0% | 43.5% |
| 3533135 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.51 | 43.0 | 2.93e-01 | 98.1% | 34.4% |
| 3607807 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.51 | 44.0 | 2.79e-01 | 100.0% | 67.4% |
| 1807484 | 59.1.1.2 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 | 0.50 | 40.0 | 3.37e-01 | 100.0% | 83.6% |
| 3350925 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.50 | 37.0 | 2.54e-01 | 83.0% | 71.8% |