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NC_070888.1__YP_010662545.1__PP939_gp137__00137

Bact-Vir

NC_070888.1__YP_010662545.1__PP939_gp137__00137

Identity

Accession:
NC_070888 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Innesvirus› Rhizobium_phage_RL38J1

TaxID: 2663232

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-65
PDB
Domain cluster: rep: JX100814.1__AFU86770.1__CcrRogue_gp288__00288__D6-83
D2 high residues 74-129
PDB
Domain cluster: rep: NC_014636.1__YP_003969343.1__phiAS5_ORF0054__00054__D13-67
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 41.0 2.67e-01 100.0% 13.7%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 39.0 2.45e-01 94.6% 11.2%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.40e-01 82.1% 89.2%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.12e-01 98.2% 60.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.15e-01 83.9% 75.0%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 3.96e-01 100.0% 74.1%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.56 46.0 3.71e-01 94.6% 53.8%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 3.75e-01 87.5% 70.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.88e-01 83.9% 75.4%
1jb7A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.20e-01 96.4% 71.6%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.52 32.0 3.50e-01 89.3% 79.1%
5a35A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 3.14e-01 80.4% 92.9%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.86e-01 98.2% 97.6%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 39.0 3.27e-01 89.3% 47.5%
2gysA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.45e-01 94.6% 89.2%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 2.85e-01 80.4% 55.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.71 54.0 4.19e-01 82.1% 43.9%
3170276 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 45.0 4.06e-01 80.4% 77.5%
2559738 79.1.1.9 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.61 40.0 2.49e-01 94.6% 10.6%
3200646 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.61 52.0 4.30e-01 98.2% 72.4%
3229319 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.32e-01 100.0% 64.5%
4649158 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 43.0 4.16e-01 78.6% 93.8%
3255034 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.76e-01 98.2% 48.1%
3260906 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.57 46.0 3.84e-01 94.6% 78.1%
3597963 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.92e-01 100.0% 69.5%
4948723 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 37.0 3.94e-01 100.0% 83.3%
4351616 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.55 47.0 3.71e-01 98.2% 65.0%
3286577 101.1.2.64 ↗ alpha arrays › HTH › HTH › winged helix domain › Lant_dehydr_N 0.54 45.0 3.67e-01 98.2% 72.2%
4492826 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 43.0 3.50e-01 91.1% 45.2%
5037634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.86e-01 100.0% 84.7%
3277369 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.68e-01 94.6% 75.8%
3266017 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 2.42e-01 78.6% 95.2%
3232476 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 39.0 3.33e-01 85.7% 71.0%
3220245 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 39.0 2.85e-01 87.5% 99.4%
3952896 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 41.0 3.24e-01 91.1% 73.4%