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NC_070889.1__YP_010662892.1__PP940_gp214__00214

Bact-Vir

NC_070889.1__YP_010662892.1__PP940_gp214__00214

Identity

Accession:
NC_070889 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Innesvirus› Rhizobium_phage_RL2RES

TaxID: 103371

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-117
PDB
Domain cluster: rep: MN228696.1__QEP29811.1__Smphiort11_013__00013__D19-108
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23772.2 best Phage_g100 49.4 1.20e-12 98.1% 95.2%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 40.0 5.02e-01 86.7% 85.9%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.74 44.0 3.68e-01 86.7% 35.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 45.0 5.26e-01 88.6% 86.7%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 5.32e-01 94.3% 95.2%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 45.0 5.37e-01 87.6% 94.4%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 4.70e-01 93.3% 63.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 5.12e-01 87.6% 92.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 5.08e-01 88.6% 89.3%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.69e-01 88.6% 61.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 45.0 4.54e-01 87.6% 70.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.63e-01 80.0% 93.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 51.0 4.57e-01 88.6% 60.7%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.64 42.0 4.80e-01 85.7% 92.1%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.63 38.0 4.38e-01 79.0% 82.9%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 3.81e-01 87.6% 58.4%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 42.0 4.90e-01 83.8% 98.6%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 42.0 4.21e-01 87.6% 67.9%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 52.0 4.14e-01 90.5% 75.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 51.0 4.45e-01 89.5% 69.5%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 45.0 4.52e-01 88.6% 78.8%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 45.0 4.52e-01 78.1% 92.3%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 46.0 4.39e-01 87.6% 70.5%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.35e-01 82.9% 79.2%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.59 45.0 4.61e-01 99.0% 83.3%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 50.0 4.80e-01 91.4% 86.6%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.60e-01 87.6% 81.3%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 3.68e-01 79.0% 87.9%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 4.24e-01 78.1% 94.1%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.21e-01 100.0% 65.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 44.0 4.13e-01 87.6% 72.4%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 31.0 2.82e-01 80.0% 40.1%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 37.0 3.71e-01 87.6% 72.7%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.64e-01 75.2% 76.4%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 46.0 5.73e-01 87.6% 100.0%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 47.0 5.04e-01 88.6% 76.7%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 44.0 4.66e-01 90.5% 68.4%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 46.0 5.46e-01 84.8% 97.1%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 40.0 5.19e-01 86.7% 100.0%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.71 47.0 5.15e-01 88.6% 83.5%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 46.0 4.75e-01 88.6% 70.0%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.69 45.0 5.25e-01 89.5% 93.3%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 41.0 5.10e-01 85.7% 96.9%
5058103 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 5.19e-01 92.4% 98.5%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.68 41.0 5.12e-01 86.7% 98.5%
3254881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 5.36e-01 85.7% 98.7%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.48e-01 87.6% 64.3%
3594413 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 47.0 5.22e-01 87.6% 95.0%
608 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 45.0 4.54e-01 87.6% 70.2%
3926950 4.1.1.214 ↗ beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.65 45.0 4.33e-01 82.9% 62.5%
4354770 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.65 42.0 5.01e-01 93.3% 98.6%
3219441 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 45.0 5.12e-01 85.7% 95.0%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 44.0 5.15e-01 89.5% 100.0%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.70e-01 91.4% 76.2%
3998386 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 45.0 4.41e-01 86.7% 67.8%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 45.0 5.06e-01 88.6% 96.2%
3406338 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 46.0 4.51e-01 88.6% 70.4%
1174943 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 43.0 4.94e-01 92.4% 96.2%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.96e-01 87.6% 98.7%
3791777 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 46.0 5.09e-01 89.5% 96.5%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.62 53.0 5.05e-01 92.4% 84.2%
None — 0.61 52.0 4.26e-01 90.5% 56.5%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.39e-01 84.8% 81.2%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 43.0 4.24e-01 87.6% 67.9%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.86e-01 89.5% 79.1%
3888395 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 45.0 4.99e-01 87.6% 96.4%
3617741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.09e-01 90.5% 85.4%
578 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 42.0 3.94e-01 88.6% 58.6%
3935042 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 42.0 4.18e-01 84.8% 68.2%
26065 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 44.0 4.34e-01 89.5% 71.6%
3918912 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.21e-01 87.6% 66.3%
3991229 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.60 51.0 4.37e-01 90.5% 89.7%
4107641 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.07e-01 88.6% 70.0%
572 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.60 45.0 4.52e-01 88.6% 78.8%
3584109 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.42e-01 88.6% 73.6%
609 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 46.0 4.41e-01 87.6% 71.3%
3237027 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 42.0 4.43e-01 89.5% 82.1%
3653487 4.1.1.324 ↗ beta barrels › SH3 › SH3 › SH3 › Nodulin_C 0.59 47.0 5.06e-01 87.6% 100.0%
3371134 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.66e-01 87.6% 76.7%
3829476 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 53.0 4.44e-01 98.1% 76.6%
3624306 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 51.0 4.84e-01 97.1% 79.2%
3917043 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 42.0 3.54e-01 88.6% 45.1%
4013406 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.74e-01 82.9% 100.0%
3934274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.52e-01 93.3% 77.9%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 44.0 4.25e-01 89.5% 70.0%
3189521 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 43.0 4.73e-01 89.5% 95.3%
3487371 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 43.0 4.53e-01 77.1% 100.0%
3831450 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 45.0 4.81e-01 93.3% 96.7%
5012425 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.57 46.0 4.13e-01 89.5% 63.6%
4079646 220.1.1.179 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran-binding 0.57 45.0 3.64e-01 85.7% 80.0%
5070350 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.56 41.0 3.64e-01 75.2% 96.7%
3612182 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.70e-01 83.8% 100.0%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 39.0 4.37e-01 80.0% 95.0%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.55 43.0 4.12e-01 88.6% 72.5%
3169636 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.55 41.0 4.51e-01 86.7% 95.3%
4329871 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 34.0 2.85e-01 91.4% 33.7%
3555838 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.55 41.0 4.46e-01 91.4% 92.2%
3657432 220.1.1.205 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 0.54 42.0 3.93e-01 81.9% 88.4%
3863963 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.53 41.0 3.93e-01 83.8% 73.6%
3226923 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 40.0 2.78e-01 82.9% 30.3%
3875355 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.51 46.0 3.79e-01 100.0% 61.6%