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NC_070895.1__YP_010663316.1__PP996_gp43__00043

Bact-Vir

NC_070895.1__YP_010663316.1__PP996_gp43__00043

Identity

Accession:
NC_070895 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ponsvirus› Gordonia_phage_SheckWes

TaxID: 2591117

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-141
PDB
Domain cluster: rep: OQ999172.1__WJZ23544.1__LIS04_116__00116__D6-94
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 41.0 4.79e-01 96.2% 95.4%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 47.0 5.27e-01 99.0% 100.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 36.0 4.33e-01 73.1% 83.8%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.64 41.0 4.73e-01 97.1% 94.3%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.61 44.0 4.76e-01 100.0% 91.8%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 36.0 3.40e-01 73.1% 48.1%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 49.0 5.06e-01 100.0% 94.9%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.51e-01 100.0% 75.0%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 4.58e-01 87.5% 96.7%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 4.85e-01 99.0% 95.6%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 4.26e-01 81.7% 95.3%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.59 39.0 4.21e-01 100.0% 81.6%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.59 46.0 4.33e-01 87.5% 69.1%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 45.0 4.44e-01 81.7% 95.5%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.85e-01 99.0% 92.9%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 30.0 3.98e-01 87.5% 98.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 29.0 2.69e-01 91.3% 36.2%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.57 43.0 4.61e-01 98.1% 94.4%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 46.0 4.60e-01 86.5% 97.2%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.57 35.0 3.91e-01 90.4% 78.0%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.56 31.0 3.60e-01 74.0% 78.3%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 49.0 4.00e-01 100.0% 70.5%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 4.52e-01 98.1% 90.8%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 48.0 4.62e-01 95.2% 94.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 47.0 4.41e-01 94.2% 93.1%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 34.0 3.66e-01 94.2% 73.0%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.54 35.0 3.73e-01 98.1% 75.3%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.54 44.0 4.12e-01 86.5% 90.6%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 47.0 4.41e-01 99.0% 76.7%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 47.0 4.42e-01 100.0% 82.8%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.54 29.0 3.36e-01 97.1% 73.2%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 37.0 3.49e-01 100.0% 57.1%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 46.0 4.23e-01 100.0% 79.9%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 47.0 4.22e-01 99.0% 100.0%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 4.10e-01 92.3% 99.2%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 4.07e-01 92.3% 92.2%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 4.34e-01 100.0% 86.0%
6bg2A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.47e-01 96.2% 61.6%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 4.06e-01 91.3% 91.9%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 43.0 3.98e-01 93.3% 90.3%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.51 44.0 3.97e-01 100.0% 76.6%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 45.0 4.09e-01 100.0% 76.1%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 33.0 3.53e-01 94.2% 78.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964606 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 78.0 6.50e-01 100.0% 73.5%
4033192 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 72.0 6.62e-01 100.0% 82.3%
3750744 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.74 41.0 5.12e-01 92.3% 89.1%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 54.0 5.27e-01 100.0% 70.4%
3970846 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 46.0 5.11e-01 96.2% 82.5%
3166240 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 42.0 5.18e-01 91.3% 100.0%
4930846 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.70 39.0 5.04e-01 91.3% 96.7%
3784708 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.69 48.0 5.28e-01 97.1% 89.4%
2859147 7091.1.1.1 ↗ a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 0.69 62.0 5.49e-01 100.0% 74.0%
3961045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 48.0 4.96e-01 97.1% 76.0%
4298544 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 53.0 4.97e-01 100.0% 69.6%
4145173 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 49.0 4.94e-01 99.0% 76.2%
3505867 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.67 42.0 4.86e-01 97.1% 88.0%
4087511 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 50.0 4.95e-01 100.0% 74.5%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 37.0 4.38e-01 100.0% 80.0%
5063738 2.1.1.271 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26390 0.66 49.0 4.86e-01 100.0% 74.5%
4592273 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.65 41.0 3.99e-01 98.1% 55.0%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 4.76e-01 95.2% 81.1%
3716770 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.65 43.0 4.32e-01 96.2% 65.7%
3997678 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 52.0 5.17e-01 100.0% 81.8%
3289386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 45.0 4.90e-01 96.2% 85.2%
3287532 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 48.0 4.92e-01 99.0% 82.0%
5046188 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 43.0 4.88e-01 97.1% 97.3%
3870119 2.1.1.119 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.62 49.0 4.24e-01 99.0% 53.9%
3285635 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 47.0 4.95e-01 100.0% 88.4%
3616990 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 50.0 4.95e-01 100.0% 81.8%
4343990 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 37.0 3.97e-01 99.0% 70.6%
3937661 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 35.0 4.24e-01 72.1% 89.2%
4927342 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 4.92e-01 99.0% 93.3%
4935901 2.1.1.382 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 0.60 44.0 4.66e-01 99.0% 88.8%
3366703 2.1.1.157 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.60 49.0 4.48e-01 99.0% 68.1%
3411413 2.1.1.119 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.59 47.0 4.05e-01 99.0% 52.9%
3909994 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.59 50.0 4.26e-01 100.0% 56.6%
3955464 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 4.75e-01 100.0% 94.4%
4375028 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 46.0 4.29e-01 86.5% 69.6%
4934871 2.1.1.368 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arcadin_1 0.57 52.0 5.13e-01 97.1% 100.0%
3678038 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.56 39.0 4.35e-01 90.4% 98.7%
3862290 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 43.0 3.85e-01 83.7% 75.5%
3593482 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.56 47.0 4.79e-01 96.2% 94.0%
3744517 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 4.24e-01 86.5% 99.2%
3611119 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.54 48.0 4.45e-01 100.0% 84.4%
3806939 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.54 45.0 4.65e-01 99.0% 98.9%
3517955 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.53 47.0 4.20e-01 100.0% 79.3%
4022461 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.53 47.0 3.81e-01 100.0% 66.8%
1238053 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 36.0 2.49e-01 70.2% 29.5%
3257603 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 43.0 4.18e-01 92.3% 95.0%
3580096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 45.0 4.26e-01 95.2% 96.0%
3994973 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.52 45.0 4.26e-01 99.0% 86.9%
4483150 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 3.82e-01 94.2% 85.0%
3961460 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 46.0 4.11e-01 100.0% 70.0%
4012805 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.51 43.0 4.01e-01 92.3% 90.8%
3841771 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 42.0 3.80e-01 92.3% 82.7%
3564807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 42.0 3.71e-01 91.3% 76.8%
3643907 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 42.0 3.69e-01 92.3% 75.6%