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NC_070897.1__YP_010663448.1__PP998_gp31__00031

Bact-Vir

NC_070897.1__YP_010663448.1__PP998_gp31__00031

Identity

Accession:
NC_070897 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ponsvirus› Gordonia_phage_Vine

TaxID: 2857501

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-137
PDB
Domain cluster: rep: amazon_plume_scaffold_4_prodigal-single.1__X__X__00098__D6-72
CATH (87)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.92 76.0 7.74e-01 100.0% 90.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.90 74.0 7.42e-01 100.0% 88.2%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.86 78.0 6.17e-01 100.0% 65.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 76.0 7.07e-01 100.0% 79.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 76.0 7.25e-01 100.0% 98.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 72.0 6.66e-01 100.0% 77.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 73.0 6.38e-01 100.0% 71.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 72.0 7.17e-01 100.0% 94.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 68.0 6.28e-01 100.0% 72.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 6.86e-01 100.0% 94.9%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.80 64.0 6.20e-01 100.0% 77.2%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.80 73.0 5.13e-01 100.0% 50.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 66.0 6.40e-01 100.0% 83.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.92e-01 100.0% 98.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.79 72.0 5.09e-01 100.0% 52.4%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.79 71.0 5.02e-01 100.0% 52.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.79 72.0 4.56e-01 100.0% 31.2%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 71.0 6.08e-01 100.0% 69.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 70.0 6.65e-01 100.0% 95.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 69.0 7.01e-01 100.0% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 69.0 5.91e-01 100.0% 70.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 68.0 6.56e-01 100.0% 96.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 6.06e-01 100.0% 79.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 65.0 5.95e-01 100.0% 80.0%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.88e-01 100.0% 93.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 6.03e-01 100.0% 81.7%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 5.58e-01 100.0% 80.8%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 58.0 5.25e-01 88.2% 80.0%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 63.0 5.55e-01 100.0% 79.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.53e-01 100.0% 80.8%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 4.43e-01 100.0% 39.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 60.0 5.54e-01 100.0% 79.1%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 52.0 4.09e-01 80.4% 72.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.41e-01 100.0% 78.7%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 46.0 3.53e-01 70.6% 66.7%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 59.0 4.00e-01 100.0% 49.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 58.0 5.17e-01 100.0% 73.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.67 57.0 4.81e-01 100.0% 77.8%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 46.0 4.83e-01 72.5% 95.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.10e-01 100.0% 75.4%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 54.0 5.16e-01 90.2% 91.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.65 55.0 4.48e-01 100.0% 76.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 53.0 4.97e-01 88.2% 86.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 4.93e-01 100.0% 68.8%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 4.70e-01 72.5% 93.3%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 56.0 3.23e-01 96.1% 15.9%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 53.0 5.22e-01 94.1% 87.5%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 3.94e-01 94.1% 51.5%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 45.0 4.15e-01 76.5% 78.3%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 3.30e-01 100.0% 41.7%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 50.0 5.03e-01 92.2% 94.2%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 53.0 3.87e-01 94.1% 75.7%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 3.70e-01 70.6% 93.7%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.63 43.0 4.49e-01 70.6% 97.8%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.62 50.0 4.25e-01 92.2% 57.5%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 46.0 4.14e-01 80.4% 76.1%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.61 49.0 3.84e-01 90.2% 54.0%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 46.0 2.93e-01 84.3% 41.3%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 47.0 2.95e-01 84.3% 42.7%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.60 44.0 3.91e-01 80.4% 97.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 49.0 4.47e-01 90.2% 79.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 51.0 4.59e-01 96.1% 80.3%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 45.0 4.19e-01 90.2% 65.2%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 47.0 4.78e-01 92.2% 94.1%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 51.0 4.75e-01 100.0% 80.3%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 48.0 4.41e-01 90.2% 77.6%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.18e-01 98.0% 58.5%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.58 47.0 4.29e-01 100.0% 66.2%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 4.27e-01 88.2% 75.9%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.78e-01 100.0% 98.3%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 46.0 3.34e-01 96.1% 73.6%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 43.0 4.24e-01 90.2% 80.7%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.55 41.0 4.20e-01 82.4% 88.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 45.0 4.17e-01 100.0% 74.3%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 43.0 3.85e-01 88.2% 62.2%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 43.0 2.81e-01 92.2% 39.8%
1ok8A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.54 46.0 3.63e-01 100.0% 71.3%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 45.0 2.95e-01 94.1% 73.5%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 40.0 2.75e-01 90.2% 80.7%
7d27A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 40.0 2.70e-01 88.2% 82.2%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.24e-01 90.2% 82.3%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 41.0 3.42e-01 88.2% 100.0%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 43.0 3.12e-01 94.1% 38.4%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.21e-01 92.2% 90.3%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.08e-01 86.3% 84.9%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 44.0 3.02e-01 100.0% 31.2%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.27e-01 96.1% 58.3%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3799904 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.88 80.0 4.62e-01 100.0% 15.7%
4354770 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.87 77.0 6.86e-01 100.0% 70.0%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.87 78.0 6.01e-01 100.0% 57.3%
5069062 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.87 77.0 7.31e-01 100.0% 83.1%
4983006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 75.0 6.80e-01 100.0% 72.3%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 79.0 6.99e-01 100.0% 72.9%
5029655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 76.0 7.16e-01 100.0% 81.7%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 76.0 7.13e-01 100.0% 81.7%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 76.0 6.96e-01 100.0% 75.4%
1117666 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.85 77.0 6.44e-01 100.0% 76.5%
3785900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 78.0 4.46e-01 100.0% 15.1%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.85 76.0 6.78e-01 100.0% 72.1%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.84 75.0 7.03e-01 100.0% 81.7%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.84 70.0 6.82e-01 100.0% 83.6%
4467360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 73.0 6.91e-01 100.0% 81.7%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 77.0 5.43e-01 100.0% 36.4%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.82 70.0 6.88e-01 94.1% 94.5%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 70.0 6.88e-01 100.0% 87.3%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 76.0 7.13e-01 100.0% 85.0%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 70.0 7.07e-01 100.0% 94.0%
3720772 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 73.0 6.54e-01 100.0% 84.3%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 73.0 6.55e-01 100.0% 84.3%
3460576 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.80 63.0 3.91e-01 84.3% 21.9%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 7.12e-01 100.0% 98.0%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 71.0 6.37e-01 100.0% 84.3%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 71.0 4.96e-01 100.0% 34.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 72.0 6.26e-01 100.0% 72.0%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 69.0 6.24e-01 98.0% 82.9%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 71.0 6.76e-01 100.0% 90.0%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 70.0 5.47e-01 100.0% 47.6%
3284223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.24e-01 100.0% 74.3%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.79 67.0 6.78e-01 96.1% 96.0%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 71.0 5.72e-01 100.0% 54.7%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 69.0 4.89e-01 98.0% 38.0%
3699995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 71.0 6.35e-01 100.0% 74.3%
4071917 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.79 63.0 6.35e-01 100.0% 90.0%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 71.0 5.31e-01 100.0% 44.2%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 5.15e-01 98.0% 64.2%
4168653 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.78 66.0 6.66e-01 100.0% 94.0%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 5.97e-01 100.0% 66.7%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.78 71.0 6.16e-01 100.0% 68.0%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 69.0 6.54e-01 100.0% 98.3%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.00e-01 100.0% 66.7%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.43e-01 100.0% 84.4%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 65.0 5.39e-01 100.0% 53.3%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.77 64.0 5.91e-01 100.0% 72.3%
3790897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 70.0 5.52e-01 100.0% 51.0%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 64.0 5.35e-01 100.0% 53.3%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.77 67.0 5.52e-01 100.0% 63.2%
3483363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.24e-01 100.0% 78.5%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.77 67.0 5.69e-01 100.0% 70.6%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.77 66.0 5.46e-01 100.0% 63.2%
3959770 4.31.1.0 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.77 67.0 5.59e-01 100.0% 67.8%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.77 66.0 5.64e-01 100.0% 70.6%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 68.0 6.03e-01 100.0% 78.4%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 5.56e-01 100.0% 64.4%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 67.0 5.56e-01 100.0% 66.7%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.76 68.0 6.24e-01 100.0% 78.5%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 65.0 5.30e-01 100.0% 58.0%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 66.0 5.86e-01 100.0% 69.3%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.75 67.0 5.90e-01 100.0% 68.0%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.75 65.0 5.28e-01 100.0% 60.0%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.75 66.0 5.45e-01 100.0% 64.4%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.75 66.0 4.67e-01 100.0% 34.2%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.75 68.0 5.05e-01 100.0% 43.3%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 68.0 6.05e-01 100.0% 74.3%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 64.0 5.05e-01 100.0% 55.5%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 65.0 5.23e-01 100.0% 68.0%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 65.0 5.21e-01 100.0% 57.0%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.74 65.0 5.86e-01 100.0% 71.4%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 4.88e-01 100.0% 41.6%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.73 64.0 5.82e-01 100.0% 85.7%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.49e-01 100.0% 61.2%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.72 63.0 5.75e-01 100.0% 83.8%
3505711 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 66.0 5.47e-01 100.0% 61.2%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 62.0 5.19e-01 100.0% 61.1%
3215090 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 48.0 4.48e-01 72.5% 61.5%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.77e-01 100.0% 89.1%
4187163 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.69 54.0 4.11e-01 84.3% 57.4%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.02e-01 100.0% 70.0%
3163776 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 52.0 3.86e-01 84.3% 53.1%
4095892 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.66 51.0 3.70e-01 84.3% 54.3%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.86e-01 100.0% 73.0%
5077962 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.64 51.0 3.82e-01 86.3% 52.0%
3974126 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 49.0 3.32e-01 86.3% 23.5%
3237428 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 53.0 3.19e-01 96.1% 26.7%
4068291 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.64 52.0 4.99e-01 94.1% 81.7%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.62 53.0 4.87e-01 94.1% 90.8%
4502644 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.61 46.0 3.62e-01 86.3% 46.7%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.61 51.0 3.90e-01 96.1% 43.2%
4939020 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 53.0 3.72e-01 100.0% 63.6%
3399366 9.14.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › DUF7042 0.60 52.0 3.82e-01 100.0% 80.7%
3494351 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.60 51.0 3.80e-01 98.0% 73.7%
5063379 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.59 48.0 3.35e-01 94.1% 42.2%
3282006 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 42.0 4.14e-01 78.4% 78.2%
3737071 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.56 44.0 4.25e-01 90.2% 78.0%
5054449 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.56 42.0 3.84e-01 92.2% 60.9%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.56 47.0 4.18e-01 100.0% 87.3%
3804890 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.55 43.0 4.20e-01 88.2% 76.3%
D2 medium residues 1-80
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 44.0 3.46e-01 75.0% 50.3%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 34.0 2.88e-01 71.2% 33.3%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.50e-01 71.2% 66.1%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.58 40.0 3.82e-01 73.8% 87.6%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.58 41.0 3.80e-01 76.2% 92.5%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.22e-01 100.0% 63.5%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 38.0 3.22e-01 72.5% 83.9%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 38.0 3.28e-01 73.8% 70.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 37.0 3.17e-01 75.0% 78.3%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 3.47e-01 88.7% 98.7%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.52 45.0 2.91e-01 100.0% 56.8%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.36e-01 80.0% 64.6%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.52 43.0 3.25e-01 93.8% 90.8%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 3.23e-01 87.5% 58.5%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.38e-01 71.2% 100.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4091851 6.1.1.2 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.63 45.0 3.49e-01 75.0% 49.1%
3685970 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 42.0 3.36e-01 72.5% 81.2%
4022796 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 42.0 3.54e-01 72.5% 87.2%
3631831 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 42.0 3.14e-01 72.5% 81.5%
3218122 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.57 46.0 3.84e-01 95.0% 50.0%
3390286 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.57 40.0 3.47e-01 72.5% 87.2%
3969530 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 38.0 3.44e-01 71.2% 73.0%
3641381 6.1.1.25 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 0.55 38.0 3.13e-01 72.5% 81.3%
3391098 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 39.0 3.19e-01 77.5% 54.4%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 31.0 3.54e-01 71.2% 81.8%
3632850 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.53 44.0 2.97e-01 100.0% 77.1%
5039568 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.53 35.0 2.98e-01 77.5% 42.3%
4648652 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.53 36.0 3.31e-01 71.2% 87.6%
3200774 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.85e-01 100.0% 78.3%