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NC_070901.1__YP_010663632.1__PQA02_gp07__00007

Bact-Vir

NC_070901.1__YP_010663632.1__PQA02_gp07__00007

Identity

Accession:
NC_070901 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02368.25 best Big_2 30.9 2.90e-07 95.7% 53.2%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f00I02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.96 90.0 7.01e-01 100.0% 52.8%
4aq1A03 2.60.40.3440 Mainly Beta › Sandwich › Immunoglobulin-like › 0.90 81.0 5.93e-01 100.0% 43.5%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.83 52.0 3.81e-01 97.8% 26.4%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.80 51.0 4.16e-01 100.0% 36.1%
5i8dA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.78 69.0 5.16e-01 100.0% 53.6%
4jguA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 67.0 5.26e-01 100.0% 51.6%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 55.0 4.59e-01 100.0% 48.1%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.72 60.0 5.03e-01 100.0% 65.9%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 61.0 4.69e-01 100.0% 71.3%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 45.0 3.27e-01 100.0% 22.7%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.70 45.0 3.44e-01 100.0% 27.3%
5euvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 58.0 4.76e-01 100.0% 58.5%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 50.0 3.38e-01 100.0% 21.7%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.70 46.0 3.84e-01 100.0% 40.0%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.65 52.0 4.89e-01 100.0% 71.4%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 44.0 3.57e-01 97.8% 38.5%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.62 53.0 4.29e-01 100.0% 53.2%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 53.0 3.45e-01 97.8% 34.6%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 42.0 2.67e-01 100.0% 13.1%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.62 52.0 4.30e-01 100.0% 58.9%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.67e-01 100.0% 40.9%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.61 43.0 4.02e-01 100.0% 58.1%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.60 42.0 3.17e-01 95.7% 29.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 3.09e-01 97.8% 26.8%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.14e-01 100.0% 67.5%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.58 38.0 3.82e-01 95.7% 65.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 46.0 2.66e-01 89.1% 32.6%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.57 44.0 2.84e-01 100.0% 17.3%
2e5eA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.70e-01 100.0% 68.3%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.04e-01 87.0% 69.7%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 52.0 3.78e-01 100.0% 42.1%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.57 50.0 3.46e-01 100.0% 51.6%
2gshA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 50.0 3.39e-01 100.0% 48.8%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 2.72e-01 89.1% 44.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.72e-01 100.0% 52.0%
3q45A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 51.0 3.61e-01 100.0% 38.1%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 50.0 3.18e-01 100.0% 35.8%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 50.0 3.34e-01 100.0% 39.9%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.55 49.0 3.63e-01 100.0% 62.9%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 49.0 3.42e-01 100.0% 34.8%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.54 43.0 2.94e-01 100.0% 24.9%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.53 43.0 2.89e-01 100.0% 95.9%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.65e-01 91.3% 72.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032780 11.1.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.99 94.0 7.34e-01 100.0% 56.5%
3675781 11.1.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.97 92.0 7.23e-01 100.0% 60.0%
3366545 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.97 89.0 7.33e-01 100.0% 60.0%
4196085 11.1.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.97 89.0 7.01e-01 100.0% 52.9%
3935213 11.1.1.827 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.96 90.0 7.27e-01 100.0% 60.0%
3453458 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.96 88.0 7.28e-01 100.0% 60.0%
409389 11.1.1.870 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26918 0.96 88.0 6.69e-01 100.0% 47.4%
3244196 11.1.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.96 90.0 7.22e-01 100.0% 60.0%
3302753 11.1.1.592 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig3 0.93 86.0 6.72e-01 100.0% 53.3%
4258879 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.93 84.0 6.88e-01 100.0% 60.0%
5002194 11.1.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.93 83.0 6.64e-01 100.0% 52.9%
3855675 11.1.1.898 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.92 84.0 6.87e-01 100.0% 57.5%
2516727 11.1.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.92 83.0 6.20e-01 100.0% 47.7%
3261040 11.1.1.827 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.91 83.0 6.65e-01 100.0% 56.5%
3566232 11.1.1.898 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.89 81.0 6.06e-01 100.0% 43.8%
3566233 11.1.1.827 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.89 81.0 6.48e-01 100.0% 56.5%
3261039 11.1.1.898 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.88 81.0 6.60e-01 100.0% 61.3%
3996413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.85 75.0 6.35e-01 100.0% 64.0%
337848 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 53.0 4.17e-01 100.0% 32.6%
3584255 11.1.1.898 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.82 71.0 6.11e-01 100.0% 64.0%
4552526 11.1.1.39 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_1 0.81 71.0 5.52e-01 100.0% 56.0%
3619672 11.1.1.592 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig3 0.81 73.0 5.68e-01 100.0% 54.7%
5070592 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.77 68.0 5.54e-01 100.0% 54.1%
5013353 11.1.4.106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.77 61.0 4.87e-01 100.0% 43.2%
5012585 11.1.4.106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.76 60.0 5.42e-01 100.0% 63.1%
5006284 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 66.0 5.67e-01 100.0% 61.3%
4954463 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 66.0 6.29e-01 100.0% 90.9%
3773475 3414.1.1.6 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › HYR 0.75 58.0 4.73e-01 100.0% 45.9%
5012586 11.1.4.106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.74 57.0 5.21e-01 100.0% 63.1%
5081599 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.74 62.0 5.40e-01 100.0% 66.7%
4968752 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.73 64.0 4.83e-01 100.0% 45.5%
5035710 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 62.0 5.31e-01 97.8% 69.3%
5061282 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.72 62.0 5.34e-01 100.0% 62.7%
4969981 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 62.0 5.23e-01 100.0% 62.5%
5012584 11.1.4.106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.72 62.0 5.35e-01 100.0% 61.3%
2472963 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.72 60.0 4.96e-01 100.0% 52.3%
5013352 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.71 55.0 5.28e-01 100.0% 72.7%
2866916 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.71 61.0 4.97e-01 100.0% 64.8%
3748155 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.71 42.0 2.70e-01 100.0% 13.0%
3971819 11.1.4.25 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.70 61.0 5.00e-01 100.0% 55.3%
4047163 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.70 59.0 4.91e-01 100.0% 57.6%
4000236 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.70 60.0 5.05e-01 100.0% 57.5%
4968075 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.69 57.0 4.83e-01 100.0% 60.0%
3901343 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.68 58.0 4.99e-01 100.0% 61.3%
4957984 11.1.4.106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.68 59.0 5.16e-01 100.0% 70.0%
4982441 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 57.0 4.75e-01 100.0% 60.0%
3284356 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.67 61.0 3.73e-01 100.0% 95.8%
4421680 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.67 60.0 4.97e-01 100.0% 58.7%
3534391 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 43.0 2.89e-01 100.0% 15.8%
3388495 3414.1.1.6 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › HYR 0.67 51.0 4.36e-01 100.0% 52.0%
5016527 11.1.4.106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.67 57.0 5.02e-01 100.0% 65.7%
4982110 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.66 55.0 4.22e-01 100.0% 68.3%
4066557 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 59.0 4.82e-01 100.0% 57.6%
5060477 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.66 56.0 4.85e-01 100.0% 65.3%
4957818 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.66 55.0 4.61e-01 100.0% 58.8%
5006286 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 52.0 4.76e-01 95.7% 66.2%
5025182 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 54.0 4.57e-01 100.0% 63.5%
4961053 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.64 52.0 4.29e-01 100.0% 58.9%
4957602 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 54.0 4.41e-01 100.0% 52.2%
4334767 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 51.0 3.94e-01 100.0% 52.6%
193502 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 50.0 3.42e-01 100.0% 44.4%
3733326 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.51 41.0 2.56e-01 97.8% 71.3%