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NC_070901.1__YP_010663644.1__PQA02_gp19__00019

Bact-Vir

NC_070901.1__YP_010663644.1__PQA02_gp19__00019

Identity

Accession:
NC_070901 ↗
Kingdom:
phage

Quality

97.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f91B04 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.62 52.0 4.09e-01 100.0% 97.9%
3gzkA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 44.0 2.66e-01 83.3% 48.7%
2aj4B03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 43.0 3.28e-01 85.0% 76.5%
4xrvB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 49.0 3.80e-01 100.0% 43.4%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.56 41.0 3.18e-01 80.0% 37.1%
3etvA01 1.10.287.3290 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 40.0 3.70e-01 90.0% 86.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2537186 4266.1.1.3 alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › NagJ_C 0.56 49.0 4.04e-01 100.0% 67.6%
4452096 142.1.1.1 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.55 39.0 2.79e-01 75.0% 25.1%
D2 medium residues 61-168
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00132.31 best Hexapep 28.9 9.30e-07 33.3% 80.6%