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NC_070907.1__YP_010663898.1__PQA59_gp11__00011

Bact-Vir

NC_070907.1__YP_010663898.1__PQA59_gp11__00011

Identity

Accession:
NC_070907 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26815.1 best Phage_RepB 165.8 9.50e-49 97.8% 53.6%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 44.0 5.05e-01 88.0% 100.0%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.60 36.0 4.42e-01 72.8% 98.2%
4gc5A02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.56 45.0 4.57e-01 93.5% 87.8%
4huqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 3.34e-01 93.5% 39.4%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 43.0 4.71e-01 90.2% 100.0%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 37.0 4.10e-01 71.7% 100.0%
4g1uD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.22e-01 98.9% 32.3%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 34.0 3.60e-01 80.4% 71.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.52 38.0 3.05e-01 79.3% 99.5%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.52 37.0 3.48e-01 76.1% 73.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975487 101.1.4.31 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5347 0.69 61.0 6.07e-01 98.9% 93.7%
3718088 102.9.1.1 alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 0.68 49.0 4.55e-01 75.0% 78.3%
3597551 102.9.1.0 alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain 0.66 47.0 4.50e-01 75.0% 82.7%
3957480 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.62 49.0 3.53e-01 93.5% 29.4%
4027969 102.9.1.0 alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain 0.61 44.0 4.38e-01 75.0% 85.3%
3278576 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.60 47.0 3.54e-01 93.5% 34.7%
4935711 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.58 48.0 3.49e-01 92.4% 34.5%
3358280 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 45.0 3.32e-01 92.4% 31.6%
4945107 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 45.0 3.26e-01 92.4% 31.3%
4034032 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 47.0 3.46e-01 92.4% 35.7%
3840028 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 48.0 3.44e-01 93.5% 43.5%
3278575 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 48.0 3.43e-01 93.5% 43.2%
4606099 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.56 45.0 3.18e-01 93.5% 26.9%
3280782 2004.1.1.6 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.56 46.0 2.86e-01 92.4% 14.9%
4962155 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 46.0 2.77e-01 93.5% 12.4%
3962390 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 46.0 3.58e-01 93.5% 40.2%
3285598 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.56 46.0 3.28e-01 93.5% 29.9%
4032383 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 47.0 3.45e-01 93.5% 34.7%
4943917 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 46.0 3.18e-01 93.5% 26.2%
4961389 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 47.0 3.17e-01 93.5% 32.5%
5063032 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 46.0 3.22e-01 93.5% 27.0%
3290038 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.55 47.0 3.43e-01 93.5% 45.6%
4194686 2004.1.1.6 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.55 46.0 3.17e-01 93.5% 46.9%
3387012 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.55 45.0 3.36e-01 92.4% 34.9%
5018892 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 46.0 2.84e-01 93.5% 20.4%
4935447 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 46.0 3.29e-01 92.4% 43.6%
5020930 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 45.0 3.17e-01 93.5% 52.0%
4498777 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 46.0 3.22e-01 92.4% 44.1%
4378987 2004.1.1.6 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.54 46.0 3.10e-01 93.5% 32.0%
5026086 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 2.74e-01 93.5% 18.7%
3165618 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 3.31e-01 93.5% 41.3%
4995533 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 47.0 3.18e-01 95.7% 34.8%
4966204 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 2.74e-01 93.5% 16.6%
4978748 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 3.15e-01 93.5% 36.0%
4036297 2004.1.1.6 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.54 45.0 2.77e-01 93.5% 18.1%
2914507 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 3.44e-01 92.4% 51.6%
3941557 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 45.0 3.32e-01 93.5% 42.4%
4662990 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 45.0 3.16e-01 93.5% 36.5%
4364993 2004.1.1.6 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.54 45.0 2.77e-01 93.5% 18.5%
3948115 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 45.0 2.86e-01 95.7% 30.0%
None 0.53 45.0 3.17e-01 93.5% 39.3%
3976874 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 45.0 3.33e-01 95.7% 61.9%
3961229 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 47.0 3.72e-01 98.9% 68.9%
5053260 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 44.0 3.09e-01 93.5% 38.7%
3943025 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 44.0 3.43e-01 95.7% 69.3%
5024667 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 44.0 3.24e-01 94.6% 60.4%
3619711 102.9.1.1 alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 0.52 41.0 4.30e-01 92.4% 91.8%
3987571 2004.1.1.6 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.52 43.0 2.63e-01 93.5% 17.9%
4101672 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 44.0 3.30e-01 93.5% 43.5%
5019396 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 43.0 3.39e-01 95.7% 72.9%
D2 medium residues 93-155
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26815.1 best Phage_RepB 113.4 1.20e-32 100.0% 38.0%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.69 47.0 5.20e-01 79.4% 91.8%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 56.0 4.96e-01 96.8% 69.1%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 43.0 4.45e-01 71.4% 72.1%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 48.0 4.76e-01 82.5% 78.8%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 48.0 4.72e-01 88.9% 80.9%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 46.0 4.57e-01 81.0% 78.8%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 46.0 4.40e-01 82.5% 70.1%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 46.0 4.11e-01 82.5% 66.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 44.0 4.42e-01 81.0% 78.5%
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 49.0 4.48e-01 93.7% 83.1%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 44.0 4.69e-01 82.5% 98.0%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 46.0 4.43e-01 85.7% 89.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.59 40.0 4.09e-01 73.0% 72.1%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 46.0 3.89e-01 95.2% 59.1%
3s0aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 40.0 3.35e-01 77.8% 45.4%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 43.0 4.29e-01 88.9% 84.8%
1c5aA00 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.55 38.0 3.81e-01 73.0% 98.5%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.55 44.0 3.48e-01 95.2% 82.1%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 45.0 4.02e-01 93.7% 83.7%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 42.0 4.02e-01 88.9% 74.7%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.54 44.0 3.64e-01 96.8% 86.4%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 44.0 3.33e-01 93.7% 65.6%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.51 35.0 3.72e-01 71.4% 82.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4837532 101.1.4.24 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.67 51.0 4.71e-01 82.5% 64.6%
4935348 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 59.0 5.49e-01 100.0% 98.8%
3838872 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.65 45.0 4.83e-01 73.0% 81.8%
4059901 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 50.0 5.03e-01 84.1% 92.3%
4062718 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.65 45.0 4.95e-01 71.4% 92.0%
3252120 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.65 46.0 4.36e-01 74.6% 64.0%
3949869 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 53.0 5.20e-01 95.2% 91.4%
3873128 150.5.1.9 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Sprouty 0.64 46.0 4.10e-01 79.4% 87.4%
3459145 4338.1.1.1 alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › DUF615 0.63 53.0 4.66e-01 95.2% 78.9%
3880607 130.1.1.31 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.61 42.0 4.50e-01 77.8% 83.6%
4966359 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 43.0 4.22e-01 95.2% 68.6%
4045754 110.1.1.18 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.59 49.0 4.21e-01 95.2% 77.1%
3972740 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.59 45.0 4.54e-01 87.3% 84.6%
3623551 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.56 46.0 3.37e-01 95.2% 74.7%
4083492 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.53 39.0 3.92e-01 82.5% 75.4%
5029994 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.53 36.0 3.57e-01 77.8% 67.7%
3594921 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 35.0 3.35e-01 95.2% 56.2%
3947056 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.52 39.0 3.85e-01 90.5% 77.1%