←Back to structures

NC_070909.1__YP_010664005.1__PQA61_gp33__00033

Bact-Vir

Identity

Accession:: NC_070909 ↗
Kingdom:: phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Elveevirus› Escherichia_phage_Cartapus

TaxID: 2904709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-114

PDB

Domain cluster: representative

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8a1gC01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.76	52.0	4.42e-01	70.2%	84.5%
2wb7A03	1.20.120.870	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain	0.69	48.0	4.57e-01	71.9%	68.4%
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.68	47.0	4.42e-01	70.2%	96.3%
3hiuD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.68	47.0	4.31e-01	71.9%	92.8%
5ffdA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.67	46.0	4.32e-01	70.2%	97.8%
2gs4A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.67	50.0	4.47e-01	78.1%	64.6%
3vnxA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.66	53.0	4.45e-01	86.8%	88.2%
4w8pA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.64	54.0	5.18e-01	89.5%	88.5%
2fzfA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.64	46.0	4.23e-01	74.6%	62.0%
2cwlB01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.63	57.0	4.30e-01	99.1%	92.8%
8d7hD01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.63	46.0	4.00e-01	75.4%	56.6%
2h21A02	3.90.1420.10	Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain	0.63	47.0	4.17e-01	78.9%	99.4%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.62	47.0	4.42e-01	78.9%	83.7%
3a8pA02	6.10.140.680	Special › Helix non-globular › Helix Hairpins ›	0.62	45.0	4.50e-01	74.6%	99.1%
4hkuB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	42.0	3.71e-01	73.7%	91.9%
3agtA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.59	50.0	4.80e-01	90.4%	81.2%
6adqG01	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.59	53.0	4.62e-01	100.0%	80.3%
2l6hA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.59	49.0	4.45e-01	89.5%	69.5%
3ieeA02	1.20.58.820	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829	0.58	48.0	5.08e-01	89.5%	100.0%
6lumG01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.58	40.0	4.06e-01	71.1%	93.8%
3axjB02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.56	40.0	4.51e-01	75.4%	100.0%
4c91A03	1.20.58.2150	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	45.0	3.99e-01	93.0%	79.3%
1sziA02	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.54	47.0	4.44e-01	95.6%	90.5%
4akfA01	3.40.1090.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain	0.53	40.0	2.96e-01	83.3%	56.7%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4941542	5057.1.1.0 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore	0.72	61.0	5.85e-01	92.1%	91.5%
5008649	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.68	57.0	4.78e-01	92.1%	93.5%
3379886	604.12.1.85 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 14-3-3	0.68	46.0	5.03e-01	72.8%	84.0%
3233339	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.67	58.0	4.76e-01	94.7%	90.5%
4927816	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.67	58.0	4.77e-01	95.6%	93.3%
5057191	3861.1.1.1 ↗	alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR	0.66	49.0	4.41e-01	78.1%	99.4%
4946099	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.66	44.0	4.96e-01	74.6%	92.8%
4947883	5082.1.1.6 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › ZT_dimer	0.65	54.0	4.55e-01	92.1%	94.0%
3719374	3843.1.1.11 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DGF-1_C	0.64	56.0	4.69e-01	97.4%	70.0%
5031064	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.63	51.0	5.36e-01	93.9%	99.0%
3971025	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.62	55.0	5.33e-01	95.6%	89.6%
3941057	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	49.0	3.40e-01	91.2%	48.2%
3561892	4106.1.1.0 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack	0.58	43.0	4.01e-01	78.9%	81.4%
3730884	192.29.1.208 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF7708	0.57	45.0	3.57e-01	83.3%	75.6%
3464696	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.57	47.0	4.53e-01	88.6%	96.2%
3325799	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.56	44.0	4.33e-01	84.2%	80.8%
5012794	4333.1.1.0 ↗	a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain	0.54	48.0	3.37e-01	96.5%	89.3%
3487164	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.51	45.0	3.47e-01	100.0%	57.9%

D2 high residues 335-393

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3a1sA02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	41.0	3.67e-01	88.1%	87.5%

D3 medium residues 115-128_200-317

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2afcA00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.50	42.0	3.99e-01	89.4%	90.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4441625	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.50	36.0	2.90e-01	75.0%	72.5%

D4 medium residues 129-199_318-334

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hn5A02	2.60.40.2060	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	44.0	4.04e-01	100.0%	70.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3908660	237.1.1.1 ↗	a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP	0.58	52.0	4.37e-01	100.0%	78.7%