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NC_070918.1__YP_010664408.1__PQA70_gp10__00010
Bact-VirNC_070918.1__YP_010664408.1__PQA70_gp10__00010
Identity
- Accession:
- NC_070918 ↗
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Graikaemvirus›
Yersinia_phage_vB_YenM_31.17
TaxID: 2914028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-88
Domain cluster:
rep: OL348188.1__UGC97303.1__X__00046__D15-89
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26815.1 best | Phage_RepB | 36.2 | 6.70e-09 | 93.9% | 27.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 50.0 | 4.76e-01 | 76.8% | 70.2% |
| 2pjzA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 3.27e-01 | 86.6% | 60.5% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 40.0 | 3.58e-01 | 74.4% | 75.2% |
| 2n80A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 41.0 | 3.94e-01 | 78.0% | 80.9% |
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.56 | 41.0 | 3.96e-01 | 78.0% | 79.8% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.56 | 43.0 | 3.50e-01 | 81.7% | 61.1% |
| 2b2hA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.55 | 46.0 | 2.96e-01 | 91.5% | 71.6% |
| 2xcjA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 36.0 | 3.60e-01 | 70.7% | 88.1% |
| 6sl5601 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.52 | 33.0 | 2.67e-01 | 78.0% | 34.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3975487 | 101.1.4.31 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5347 | 0.78 | 62.0 | 5.88e-01 | 82.9% | 77.9% |
| 3830143 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.72 | 50.0 | 5.01e-01 | 72.0% | 86.9% |
| 5047454 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.69 | 49.0 | 4.85e-01 | 74.4% | 89.4% |
| 3278575 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.67 | 46.0 | 3.22e-01 | 70.7% | 28.0% |
| 3278576 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.67 | 46.0 | 3.33e-01 | 70.7% | 42.2% |
| 4032383 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.67 | 46.0 | 3.27e-01 | 70.7% | 30.2% |
| 3718088 | 102.9.1.1 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 | 0.67 | 50.0 | 4.51e-01 | 80.5% | 75.7% |
| 3958191 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 45.0 | 3.50e-01 | 72.0% | 52.5% |
| 3597551 | 102.9.1.0 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain | 0.64 | 47.0 | 4.36e-01 | 80.5% | 80.9% |
| 3496495 | 102.9.1.0 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain | 0.63 | 46.0 | 4.29e-01 | 78.0% | 81.0% |
| 3867143 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.63 | 47.0 | 3.09e-01 | 78.0% | 72.8% |
| 4130154 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.63 | 44.0 | 3.09e-01 | 73.2% | 38.1% |
| 3927511 | 102.9.1.1 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 | 0.62 | 46.0 | 4.36e-01 | 79.3% | 84.0% |
| 3619711 | 102.9.1.1 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 | 0.61 | 43.0 | 4.31e-01 | 73.2% | 92.9% |
| 4027969 | 102.9.1.0 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain | 0.61 | 46.0 | 4.44e-01 | 81.7% | 85.3% |
| 5020930 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.59 | 41.0 | 2.82e-01 | 73.2% | 48.9% |
| 3168110 | 102.9.1.1 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 | 0.58 | 47.0 | 4.19e-01 | 90.2% | 81.7% |
| 167760 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 45.0 | 3.27e-01 | 86.6% | 60.5% |
| 3738441 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 46.0 | 3.30e-01 | 86.6% | 42.5% |
| 3060789 | 102.9.1.1 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 | 0.57 | 43.0 | 4.10e-01 | 81.7% | 85.0% |
| 4962155 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 49.0 | 2.89e-01 | 97.6% | 53.4% |
| 3840028 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 46.0 | 3.25e-01 | 90.2% | 48.5% |
| 3208854 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.56 | 49.0 | 2.93e-01 | 98.8% | 63.1% |
| 4935447 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 46.0 | 3.17e-01 | 90.2% | 48.0% |
| 5024667 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 44.0 | 3.10e-01 | 86.6% | 57.0% |
| 4034032 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 44.0 | 3.29e-01 | 90.2% | 62.6% |
| 3943969 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 44.0 | 3.25e-01 | 87.8% | 83.2% |
| 4978748 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 43.0 | 2.97e-01 | 90.2% | 49.8% |
| 3589274 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 44.0 | 3.37e-01 | 91.5% | 72.7% |
| 3501319 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 38.0 | 3.79e-01 | 74.4% | 97.6% |
| 3976874 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.53 | 44.0 | 3.09e-01 | 90.2% | 58.1% |
| 3963499 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.53 | 44.0 | 3.20e-01 | 91.5% | 56.5% |
| 4945107 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 44.0 | 3.09e-01 | 90.2% | 47.0% |
| 4031222 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 43.0 | 3.11e-01 | 90.2% | 45.5% |
| 5019396 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 43.0 | 3.18e-01 | 90.2% | 55.7% |
| 5009561 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.51 | 34.0 | 3.39e-01 | 86.6% | 64.7% |