←Back to structures
NC_070918.1__YP_010664415.1__PQA70_gp17__00017
Bact-VirNC_070918.1__YP_010664415.1__PQA70_gp17__00017
Identity
- Accession:
- NC_070918 ↗
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Graikaemvirus›
Yersinia_phage_vB_YenM_31.17
TaxID: 2914028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-128
Domain cluster:
rep: MT227924.1__QIW88970.1__phiV208_3__00003__D3-82
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kmfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 4.06e-01 | 95.2% | 98.4% |
| 1rkuA02 | 3.90.1470.10 | Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › thrh gene product, domain 2 | 0.50 | 40.0 | 3.88e-01 | 100.0% | 77.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3653880 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.59 | 35.0 | 4.05e-01 | 96.4% | 97.9% |
| 4879313 | 2498.1.1.15 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M27 | 0.53 | 39.0 | 2.46e-01 | 75.9% | 25.1% |
| None | — | 0.52 | 37.0 | 2.47e-01 | 75.9% | 73.0% | |
| 4962170 | 4271.1.1.7 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › PF26463 | 0.52 | 42.0 | 3.07e-01 | 92.8% | 88.7% |
| 3882431 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.50 | 42.0 | 3.37e-01 | 97.6% | 92.6% |