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NC_070920.1__YP_010664515.1__PQA72_gp19__00018

Bact-Vir

Identity

Accession:: NC_070920 ↗
Kingdom:: phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Arsenicumvirus› Shewanella_phage_vB_SspM_M16-3

TaxID: 2866684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-52

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22400.2 best	DUF6980	63.5	2.40e-17	100.0%	45.5%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bgdA08	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	42.0	2.89e-01	87.2%	75.4%
4oj5B01	3.30.2020.50	Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like ›	0.56	49.0	4.11e-01	100.0%	87.8%
1yu0A01	2.10.10.30	Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) ›	0.56	44.0	4.34e-01	100.0%	84.3%
4akrA01	3.30.1140.60	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit	0.55	40.0	3.15e-01	78.7%	51.9%
2kxpA01	3.30.1140.60	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit	0.55	40.0	3.12e-01	80.9%	50.5%
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.54	35.0	3.38e-01	95.7%	50.9%
3s6xC03	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.54	33.0	3.51e-01	85.1%	62.5%
2eo6A01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.53	40.0	3.23e-01	89.4%	48.1%
6ks6a01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.52	41.0	2.63e-01	93.6%	72.6%
3qyfA01	3.40.50.10770	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like)	0.52	40.0	2.81e-01	83.0%	93.3%
3n3fA01	3.40.1620.70	Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold ›	0.52	41.0	4.26e-01	91.5%	100.0%
4ms4B02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	40.0	2.91e-01	100.0%	83.9%
2jubA01	3.30.160.860	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.50	32.0	3.46e-01	80.9%	70.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3534694	4050.1.1.2 ↗	few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F-actin_cap_A	0.60	39.0	3.96e-01	89.4%	64.4%
3887265	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.58	42.0	2.58e-01	83.0%	29.0%
4958084	205.1.1.131 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_9	0.58	35.0	3.19e-01	85.1%	41.5%
4345626	305.1.1.1 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L	0.57	34.0	2.39e-01	76.6%	15.7%
5075137	205.1.1.33 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10	0.57	34.0	3.08e-01	85.1%	38.6%
2442382	3856.1.1.1 ↗	beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Tail_spike_N	0.56	49.0	3.26e-01	100.0%	36.9%
5057010	205.1.1.22 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21	0.56	34.0	2.88e-01	83.0%	32.5%
4994780	2484.1.1.124 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605	0.53	37.0	2.45e-01	74.5%	53.5%
3610272	622.1.1.0 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain	0.53	37.0	2.57e-01	76.6%	22.2%
3689617	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.51	35.0	2.15e-01	74.5%	30.3%
4367775	206.1.1.70 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1	0.50	37.0	2.30e-01	85.1%	32.0%

D2 medium residues 67-100

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22400.2 best	DUF6980	34.5	2.70e-08	100.0%	34.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wweA01	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.68	50.0	3.65e-01	85.3%	60.6%