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NC_070921.1__YP_010664619.1__PQA73_gp60__00060

Bact-Vir

NC_070921.1__YP_010664619.1__PQA73_gp60__00060

Identity

Accession:
NC_070921 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pavtokvirus› Erwinia_phage_Pavtok

TaxID: 2267655

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-102
PDB
Domain cluster: rep: EF153632.1__ABL96788.1__BcepF1.057__00057__D2-70
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d61A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 41.0 3.37e-01 70.2% 89.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 3.87e-01 72.6% 77.0%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 32.0 3.06e-01 70.2% 43.9%
1u5qA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 33.0 3.18e-01 72.6% 47.9%
1jlxA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 40.0 3.29e-01 73.8% 86.8%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 39.0 3.59e-01 71.4% 79.1%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.59e-01 84.5% 89.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 34.0 3.69e-01 72.6% 74.6%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.76e-01 82.1% 76.1%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 34.0 3.31e-01 97.6% 58.9%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.94e-01 76.2% 98.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 4.23e-01 82.1% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.84e-01 73.8% 98.0%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 38.0 3.89e-01 79.8% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.90e-01 85.7% 82.7%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 4.05e-01 77.4% 100.0%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.51 36.0 2.73e-01 76.2% 82.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.97e-01 73.8% 100.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.91e-01 73.8% 98.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.97e-01 88.1% 90.0%
4012540 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 26.0 2.83e-01 90.5% 52.0%
3797162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.77e-01 91.7% 70.0%
4998939 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 39.0 3.20e-01 78.6% 73.7%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.53 36.0 3.86e-01 83.3% 82.9%
4404324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.82e-01 75.0% 78.8%
3521181 4.1.1.229 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.34e-01 86.9% 73.1%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 31.0 3.82e-01 71.4% 100.0%
4968200 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.51 42.0 3.20e-01 94.0% 66.2%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.51 41.0 3.82e-01 91.7% 90.9%
3273300 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.50 36.0 3.60e-01 77.4% 85.6%
5077089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.70e-01 72.6% 91.4%