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NC_070928.1__YP_010664933.1__PQB30_gp07__00007

Bact-Vir

NC_070928.1__YP_010664933.1__PQB30_gp07__00007

Identity

Accession:
NC_070928 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paclarkvirus› Streptococcus_phage_IPP48

TaxID: 1916186

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-86
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 38.0 4.57e-01 75.3% 95.8%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.59 40.0 3.72e-01 70.1% 62.9%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 3.95e-01 70.1% 68.8%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.17e-01 74.0% 81.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.10e-01 72.7% 82.9%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 38.0 3.44e-01 71.4% 50.9%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 38.0 3.00e-01 71.4% 84.9%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.66e-01 93.5% 95.9%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.46e-01 94.8% 84.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 35.0 2.72e-01 71.4% 30.4%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.26e-01 71.4% 93.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055961 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 54.0 5.41e-01 75.3% 73.8%
4976896 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 53.0 4.90e-01 75.3% 58.9%
3407180 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.49e-01 83.1% 83.5%
4517901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 4.88e-01 77.9% 80.0%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 54.0 4.66e-01 80.5% 60.0%
4564484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 41.0 5.04e-01 71.4% 100.0%
3605922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.87e-01 83.1% 72.0%
5013094 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 46.0 3.54e-01 74.0% 86.1%
3968297 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 44.0 3.50e-01 72.7% 92.7%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.62 39.0 3.55e-01 71.4% 47.6%
3954938 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.31e-01 75.3% 83.1%
1815428 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.59 40.0 3.74e-01 70.1% 83.2%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.59 41.0 3.79e-01 72.7% 63.6%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 3.37e-01 76.6% 44.5%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.58 42.0 3.31e-01 76.6% 43.4%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 43.0 4.14e-01 84.4% 68.9%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.56 38.0 4.11e-01 81.8% 86.2%
4034394 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 39.0 3.60e-01 76.6% 78.2%
4108476 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.55 43.0 3.90e-01 87.0% 89.1%
3587091 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 41.0 3.65e-01 83.1% 79.2%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 36.0 2.37e-01 71.4% 73.9%
3744711 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.52 36.0 2.85e-01 72.7% 33.5%
1108456 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.52 35.0 3.23e-01 71.4% 53.7%
1108449 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.52 35.0 2.72e-01 71.4% 30.4%
3586434 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.51 36.0 2.89e-01 72.7% 36.3%
3932732 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.51 36.0 2.47e-01 77.9% 92.7%
5042216 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 39.0 3.56e-01 89.6% 98.3%