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NC_070930.1__YP_010665058.1__PQB32_gp28__00028

Bact-Vir

NC_070930.1__YP_010665058.1__PQB32_gp28__00028

Identity

Accession:
NC_070930 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paclarkvirus› Streptococcus_phage_IPP66

TaxID: 1916202

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 53.0 3.22e-01 84.9% 29.1%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 50.0 3.10e-01 84.9% 46.6%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 51.0 3.11e-01 86.8% 72.2%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 50.0 2.99e-01 86.8% 66.6%
3m1gA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 44.0 3.48e-01 75.5% 64.4%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 44.0 3.74e-01 92.5% 44.1%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.05e-01 86.8% 44.5%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.12e-01 94.3% 95.6%
4f9zA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 45.0 3.74e-01 86.8% 97.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 3.74e-01 73.6% 84.8%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.56 43.0 3.20e-01 92.5% 50.9%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.55 38.0 3.68e-01 73.6% 74.2%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 3.02e-01 94.3% 37.8%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 42.0 3.31e-01 92.5% 58.6%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 45.0 2.89e-01 92.5% 71.5%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 43.0 3.52e-01 94.3% 76.8%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 43.0 3.23e-01 88.7% 86.8%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 46.0 3.56e-01 100.0% 83.6%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 43.0 2.77e-01 92.5% 78.4%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 36.0 3.01e-01 77.4% 70.0%
4o6mA01 3.90.550.30 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.51 38.0 3.00e-01 86.8% 89.6%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.04e-01 77.4% 65.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977942 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 4.22e-01 84.9% 80.7%
5014399 206.1.1.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.69 49.0 3.19e-01 75.5% 66.5%
4029951 220.1.1.310 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.68 47.0 3.48e-01 73.6% 44.8%
3338677 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.67 48.0 2.96e-01 77.4% 31.4%
3388479 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 55.0 3.28e-01 90.6% 93.5%
None — 0.66 46.0 3.07e-01 75.5% 66.2%
3265851 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 47.0 5.29e-01 81.1% 100.0%
4023327 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.64 54.0 3.68e-01 96.2% 93.0%
3739782 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.63 53.0 3.95e-01 100.0% 95.5%
3212280 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 2.92e-01 84.9% 29.9%
3695067 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 2.94e-01 88.7% 85.5%
5013269 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 49.0 3.87e-01 88.7% 67.8%
4953306 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 47.0 3.04e-01 84.9% 82.3%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.61 49.0 4.09e-01 94.3% 90.0%
4994848 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 49.0 3.99e-01 92.5% 76.2%
3624687 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.60 47.0 4.80e-01 84.9% 94.0%
5072382 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 45.0 3.82e-01 98.1% 78.6%
1887256 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.56 45.0 3.65e-01 90.6% 52.9%
3400923 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.56 38.0 3.73e-01 77.4% 65.0%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 41.0 4.10e-01 92.5% 81.8%
3903603 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 36.0 3.26e-01 88.7% 48.0%
4943121 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 38.0 2.34e-01 81.1% 23.7%
3552883 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.53 40.0 3.67e-01 84.9% 69.3%
3691414 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 37.0 3.06e-01 77.4% 37.3%
3781064 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.53 40.0 3.74e-01 84.9% 70.0%
3937349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 37.0 2.29e-01 75.5% 15.2%
4284502 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.52 43.0 2.96e-01 98.1% 82.7%
3691998 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.52 37.0 3.51e-01 90.6% 61.5%
3169156 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.51 36.0 3.67e-01 75.5% 78.0%
3875972 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.51 35.0 3.89e-01 75.5% 97.5%
3413282 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 41.0 3.24e-01 100.0% 65.9%
3251800 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.51 35.0 3.53e-01 75.5% 70.9%
3328886 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.51 39.0 3.94e-01 92.5% 85.5%
3713437 206.1.1.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.50 35.0 2.86e-01 79.2% 59.2%
3403609 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.50 38.0 3.55e-01 96.2% 83.5%
None — 0.50 39.0 2.59e-01 94.3% 39.6%
D2 high residues 97-247
PDB
Domain cluster: rep: IMGVR_UViG_3300006876_000060-3300006876-Ga0079217_1000011916__D27-184
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 50.0 5.50e-01 90.7% 100.0%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 33.0 3.80e-01 70.9% 79.2%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 31.0 3.47e-01 70.2% 74.1%
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 40.0 4.09e-01 98.7% 85.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010296 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.80 72.0 6.88e-01 94.7% 99.4%
5010420 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.74 45.0 5.27e-01 78.8% 84.3%
4991801 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.66 51.0 5.57e-01 90.1% 96.8%
5045133 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.64 52.0 5.50e-01 90.7% 94.8%
5074348 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.63 51.0 5.35e-01 90.1% 92.1%
5011586 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 31.0 3.45e-01 78.1% 60.0%
4656411 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 50.0 5.07e-01 91.4% 94.7%
5051114 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.57 31.0 3.62e-01 79.5% 73.6%
3786356 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 31.0 3.58e-01 89.4% 73.6%
5053873 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 32.0 3.78e-01 78.1% 81.9%
5055231 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 28.0 3.39e-01 80.1% 78.9%
5041351 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 33.0 3.61e-01 82.8% 75.8%
5081646 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.52 33.0 3.80e-01 96.7% 89.5%
4554458 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 30.0 3.62e-01 78.1% 89.5%
4890431 11.1.1.153 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ERAP1_C 0.51 24.0 3.02e-01 76.8% 71.9%
4964405 5104.1.1.8 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › PF27238 0.51 29.0 3.39e-01 78.8% 77.8%