←Back to structures

NC_070930.1__YP_010665068.1__PQB32_gp38__00038

Bact-Vir

NC_070930.1__YP_010665068.1__PQB32_gp38__00038

Identity

Accession:
NC_070930 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paclarkvirus› Streptococcus_phage_IPP66

TaxID: 1916202

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: rep: FM163528.1__CAQ57834.1__X__00039__D2-50
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.76 61.0 6.17e-01 93.1% 86.2%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.73 53.0 5.60e-01 100.0% 86.5%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.67 48.0 5.10e-01 93.1% 97.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 53.0 3.94e-01 94.8% 48.5%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 47.0 3.13e-01 87.9% 53.9%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 45.0 3.21e-01 81.0% 73.0%
5uzgA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 51.0 4.53e-01 98.3% 93.3%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 40.0 2.46e-01 70.7% 77.6%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.66e-01 100.0% 82.8%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.58 45.0 3.76e-01 91.4% 95.7%
6lumB01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 35.0 2.93e-01 94.8% 31.8%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 35.0 3.45e-01 72.4% 58.1%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 39.0 3.18e-01 75.9% 54.5%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 47.0 3.11e-01 100.0% 71.3%
7tg5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.36e-01 91.4% 43.9%
7eu1A02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.54 42.0 3.39e-01 93.1% 88.8%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 3.91e-01 93.1% 86.0%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 38.0 3.39e-01 79.3% 63.8%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 2.90e-01 74.1% 33.6%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.45e-01 82.8% 88.4%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.53 36.0 3.94e-01 93.1% 89.4%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.39e-01 94.8% 97.6%
3x3bA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 44.0 2.93e-01 100.0% 52.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 40.0 3.56e-01 89.7% 100.0%
2w00A05 1.20.58.2040 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.05e-01 75.9% 52.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.93 74.0 7.93e-01 91.4% 98.0%
4991614 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.82 58.0 5.98e-01 89.7% 78.2%
4927873 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 59.0 5.84e-01 89.7% 75.0%
4981952 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 59.0 6.32e-01 94.8% 96.0%
3595897 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.76 54.0 5.57e-01 93.1% 78.2%
4956454 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 55.0 5.68e-01 93.1% 81.8%
3712471 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.75 59.0 5.57e-01 100.0% 71.0%
3592220 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.75 59.0 5.43e-01 100.0% 66.2%
4967982 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.75 53.0 5.93e-01 87.9% 100.0%
5024995 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 57.0 5.94e-01 93.1% 90.6%
4230268 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.72 51.0 5.63e-01 86.2% 97.8%
5033467 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 53.0 5.71e-01 89.7% 95.8%
3266009 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.72 50.0 5.19e-01 93.1% 78.2%
3593781 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.71 54.0 5.59e-01 93.1% 85.5%
4939553 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.69 50.0 5.33e-01 91.4% 90.0%
3703797 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.69 51.0 5.20e-01 93.1% 81.8%
5001806 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.69 48.0 5.17e-01 87.9% 89.6%
3705471 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.69 50.0 5.15e-01 93.1% 81.8%
4932061 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.69 49.0 5.33e-01 87.9% 97.8%
4952672 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 53.0 5.49e-01 93.1% 89.1%
4593896 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 47.0 5.07e-01 86.2% 93.3%
3191807 4076.3.1.6 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.68 55.0 5.11e-01 89.7% 80.0%
3251095 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.68 50.0 5.02e-01 93.1% 76.7%
4536596 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 49.0 5.20e-01 89.7% 93.8%
1346119 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.66 49.0 5.08e-01 91.4% 92.2%
5009 4076.3.1.2 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.66 48.0 5.05e-01 93.1% 93.9%
4280403 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 46.0 4.99e-01 86.2% 95.6%
3236725 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.64 53.0 3.54e-01 98.3% 58.5%
3614906 4.26.1.8 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.61 46.0 4.37e-01 82.8% 100.0%
3597664 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 36.0 3.94e-01 84.5% 73.3%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 5.00e-01 93.1% 93.3%
3243536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.47e-01 100.0% 64.7%
3935908 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 45.0 3.67e-01 87.9% 52.0%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.66e-01 91.4% 90.8%
3194884 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 41.0 2.59e-01 75.9% 52.9%
3475881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.57e-01 100.0% 75.7%
5023430 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.58 46.0 4.61e-01 93.1% 88.3%
3713555 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.58 39.0 3.37e-01 70.7% 49.5%
4934987 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.57 39.0 4.09e-01 86.2% 93.3%
4003015 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.56 47.0 4.77e-01 100.0% 94.9%
5047498 3662.1.1.4 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.55 38.0 3.19e-01 75.9% 77.4%
3581875 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 41.0 2.61e-01 91.4% 93.9%
3923898 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.53 38.0 3.51e-01 79.3% 61.3%
4017732 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.53 40.0 3.08e-01 86.2% 90.0%
3517068 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.52 41.0 3.96e-01 84.5% 78.5%
4129961 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 40.0 2.86e-01 93.1% 65.5%
3927673 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 43.0 2.62e-01 93.1% 57.8%
3720263 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.51 41.0 2.47e-01 91.4% 46.8%
4944336 2002.1.1.54 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.51 40.0 2.66e-01 94.8% 70.2%
3411973 1116.1.1.2 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.51 40.0 2.86e-01 91.4% 85.4%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.51 38.0 3.45e-01 82.8% 58.7%
4946400 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.51 35.0 2.92e-01 77.6% 97.6%
3312445 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.50 36.0 2.98e-01 82.8% 98.5%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.50 37.0 3.72e-01 86.2% 79.7%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.50 37.0 3.76e-01 82.8% 81.0%