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NC_070932.1__YP_010665195.1__PQB34_gp54__00054

Bact-Vir

Identity

Accession:: NC_070932 ↗
Kingdom:: phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Namazuvirus› Ochrobactrum_phage_POI1126

TaxID: 1932118

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-25_86-128

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mdbA02	3.40.50.980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.63	33.0	2.45e-01	79.4%	20.1%
1r0vA01	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.55	39.0	3.74e-01	86.8%	64.9%
2gjwC01	3.40.1350.150	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.55	38.0	2.95e-01	86.8%	35.0%
3mk7C01	6.10.280.130	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	31.0	2.79e-01	83.8%	44.7%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5058385	131.1.1.3 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD	0.62	31.0	2.21e-01	80.9%	17.3%
3509936	604.29.1.1 ↗	alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N	0.59	44.0	3.72e-01	79.4%	75.5%
3940660	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.57	42.0	2.42e-01	77.9%	27.9%
None	—		0.56	46.0	2.67e-01	91.2%	27.5%
5038175	2008.2.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like	0.56	37.0	3.47e-01	72.1%	57.5%
4030998	2008.1.1.205 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915	0.54	37.0	2.56e-01	72.1%	30.5%
4932437	1.1.9.14 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850	0.53	38.0	3.52e-01	75.0%	67.1%
3279804	3585.1.1.1 ↗	a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA_pol_IIIA_C	0.52	38.0	3.69e-01	76.5%	70.7%
4043462	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.52	38.0	3.18e-01	79.4%	69.2%
5016524	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.52	37.0	2.90e-01	76.5%	66.2%
4015231	129.1.1.0 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like	0.51	40.0	2.91e-01	88.2%	66.8%
4941735	865.1.1.1 ↗	beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4	0.51	41.0	2.97e-01	89.7%	83.0%
3979795	2007.1.5.19 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › 2-thiour_desulf	0.50	41.0	2.84e-01	91.2%	65.0%
4968033	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.50	41.0	2.43e-01	91.2%	65.6%
5074747	2003.6.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB	0.50	35.0	2.25e-01	73.5%	96.4%

D2 medium residues 26-85

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF28055.1 best	VVA0879	60.1	2.30e-16	100.0%	54.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lo3A01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.66	35.0	4.18e-01	86.7%	100.0%
3d00A02	3.30.60.80	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.60	32.0	3.97e-01	76.7%	100.0%
3vhtB02	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.52	30.0	3.43e-01	83.3%	94.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4978375	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.65	45.0	4.84e-01	100.0%	90.0%
5065643	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.63	42.0	4.48e-01	100.0%	82.0%
3713969	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.55	33.0	3.71e-01	83.3%	87.5%