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NC_070935.1__YP_010665377.1__PQB71_gp08__00008
Bact-VirNC_070935.1__YP_010665377.1__PQB71_gp08__00008
Identity
- Accession:
- NC_070935 ↗
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Taxonomy
TaxID: 1920305
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-61
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23826.2 best | DUF7196 | 35.5 | 1.40e-08 | 100.0% | 73.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hzeA00 | 3.30.70.1860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein family Ycf54 | 0.74 | 58.0 | 4.50e-01 | 87.5% | 85.0% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.72 | 58.0 | 5.10e-01 | 87.5% | 90.1% |
| 1vkzA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.71 | 55.0 | 4.89e-01 | 85.4% | 74.3% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.69 | 58.0 | 4.69e-01 | 100.0% | 61.6% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.67 | 54.0 | 3.71e-01 | 89.6% | 29.6% |
| 2rb7A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 3.71e-01 | 85.4% | 100.0% |
| 1wj3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 52.0 | 4.31e-01 | 100.0% | 57.0% |
| 5yyfA00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.61 | 51.0 | 3.76e-01 | 97.9% | 59.4% |
| 3rlsB00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.60 | 50.0 | 3.64e-01 | 97.9% | 59.7% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.60 | 50.0 | 4.22e-01 | 91.7% | 57.7% |
| 1auvA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 48.0 | 4.55e-01 | 97.9% | 76.7% |
| 3afhA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.59 | 49.0 | 3.90e-01 | 97.9% | 45.2% |
| 1zruC01 | 2.60.520.10 | Mainly Beta › Sandwich › Triple-stranded beta-helix › Phage fibre proteins | 0.56 | 43.0 | 3.27e-01 | 87.5% | 37.7% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.56 | 47.0 | 4.29e-01 | 100.0% | 71.6% |
| 2outA01 | 3.40.5.80 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.56 | 48.0 | 4.61e-01 | 100.0% | 98.2% |
| 1uz5A02 | 3.90.105.10 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 | 0.55 | 39.0 | 3.83e-01 | 83.3% | 82.5% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 42.0 | 3.58e-01 | 97.9% | 56.8% |
| 3vpbA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 41.0 | 3.87e-01 | 97.9% | 75.4% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.53 | 39.0 | 3.62e-01 | 83.3% | 61.5% |
| 3orqA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 41.0 | 3.89e-01 | 97.9% | 76.2% |
| 3k5iA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.52 | 39.0 | 3.71e-01 | 95.8% | 65.7% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.38e-01 | 83.3% | 88.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988225 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.77 | 61.0 | 4.45e-01 | 85.4% | 35.2% |
| 3974805 | 2498.1.1.71 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aminopep | 0.77 | 70.0 | 4.16e-01 | 100.0% | 18.5% |
| 4927166 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.74 | 58.0 | 5.29e-01 | 87.5% | 76.9% |
| 4647263 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.72 | 55.0 | 4.69e-01 | 83.3% | 94.9% |
| 3218303 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.70 | 50.0 | 5.18e-01 | 85.4% | 84.4% |
| 3961155 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.70 | 50.0 | 3.71e-01 | 87.5% | 28.1% |
| 3400735 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.69 | 53.0 | 5.09e-01 | 85.4% | 74.5% |
| 3529691 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.69 | 45.0 | 4.67e-01 | 83.3% | 73.3% |
| 4106367 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.69 | 51.0 | 5.02e-01 | 83.3% | 81.1% |
| 4268493 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.67 | 48.0 | 4.96e-01 | 83.3% | 84.4% |
| 3859590 | 386.1.1.248 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 | 0.67 | 52.0 | 5.20e-01 | 87.5% | 90.0% |
| 3400462 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.64 | 48.0 | 4.65e-01 | 85.4% | 74.1% |
| 3326144 | 355.1.1.0 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like | 0.64 | 49.0 | 4.18e-01 | 87.5% | 51.2% |
| 3816888 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.63 | 48.0 | 4.34e-01 | 87.5% | 98.6% |
| 3694884 | 11.2.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › YEATS | 0.61 | 50.0 | 3.80e-01 | 97.9% | 60.8% |
| 3807180 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.61 | 45.0 | 4.07e-01 | 87.5% | 93.3% |
| 3010626 | 11.2.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › YEATS | 0.61 | 50.0 | 3.62e-01 | 97.9% | 55.0% |
| 4061211 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.60 | 53.0 | 3.24e-01 | 100.0% | 21.4% |
| 5057426 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 42.0 | 4.01e-01 | 85.4% | 93.3% |
| 4329239 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 48.0 | 3.44e-01 | 97.9% | 52.0% |
| 3173409 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.57 | 45.0 | 3.74e-01 | 100.0% | 56.7% |
| 3988077 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.91e-01 | 87.5% | 97.1% |
| 3502158 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.54 | 42.0 | 3.17e-01 | 100.0% | 37.4% |