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NC_070935.1__YP_010665428.1__PQB71_gp59__00059

Bact-Vir

NC_070935.1__YP_010665428.1__PQB71_gp59__00059

Identity

Accession:
NC_070935 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Northamptonvirus› Mycobacterium_phage_Taptic

TaxID: 1920305

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.68 43.0 4.58e-01 85.9% 73.0%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.62 44.0 3.15e-01 76.1% 64.6%
3hzrA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.60 47.0 4.09e-01 85.9% 83.8%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.59 46.0 4.24e-01 87.3% 86.2%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.59 36.0 3.28e-01 91.5% 44.8%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 41.0 3.38e-01 84.5% 45.4%
2gutA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.54 34.0 3.32e-01 100.0% 57.1%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.54 47.0 3.54e-01 98.6% 67.0%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.53 37.0 3.72e-01 90.1% 71.2%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.53 32.0 3.24e-01 84.5% 60.9%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 37.0 3.71e-01 87.3% 72.0%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 43.0 3.19e-01 100.0% 65.8%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 40.0 3.16e-01 87.3% 86.4%
4lzjA02 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 30.0 2.93e-01 83.1% 48.1%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.50 36.0 3.75e-01 77.5% 89.7%
3bzcA02 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.50 40.0 2.80e-01 91.5% 46.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4671261 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.66 55.0 4.89e-01 93.0% 84.8%
3694051 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.65 54.0 3.32e-01 93.0% 50.1%
5040543 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 37.0 4.12e-01 100.0% 76.4%
3700029 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 38.0 3.66e-01 95.8% 54.1%
4963205 386.1.1.394 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF5810 0.60 47.0 4.86e-01 94.4% 100.0%
4261007 4973.1.1.1 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.59 36.0 3.82e-01 91.5% 67.7%
4979555 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 39.0 4.17e-01 91.5% 86.7%
4238754 223.3.1.7 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Glutaminase 0.55 37.0 2.87e-01 78.9% 31.6%
3214139 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.53 36.0 3.04e-01 71.8% 62.3%
3694374 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.52 35.0 2.47e-01 77.5% 19.6%
4097923 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.52 40.0 2.78e-01 87.3% 30.0%
5032656 5067.1.1.4 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL 0.52 41.0 3.00e-01 88.7% 57.6%
3926569 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.51 42.0 2.57e-01 95.8% 47.3%
4046675 4973.1.1.1 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.51 34.0 3.24e-01 87.3% 56.5%
4681344 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.51 41.0 3.20e-01 97.2% 40.6%
3732353 109.4.1.128 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.50 39.0 2.72e-01 88.7% 42.2%