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NC_070935.1__YP_010665431.1__PQB71_gp62__00062
Bact-VirNC_070935.1__YP_010665431.1__PQB71_gp62__00062
Identity
- Accession:
- NC_070935 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Taxonomy
TaxID: 1920305
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-72
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzcA02 | 1.10.3500.10 | Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like | 0.65 | 56.0 | 3.78e-01 | 95.6% | 51.2% |
| 4r70B03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.61 | 49.0 | 3.81e-01 | 86.8% | 85.2% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.61 | 54.0 | 3.83e-01 | 98.5% | 75.1% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.61 | 52.0 | 4.71e-01 | 98.5% | 82.5% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 45.0 | 3.45e-01 | 82.4% | 87.7% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 40.0 | 3.01e-01 | 70.6% | 83.7% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 44.0 | 3.87e-01 | 80.9% | 68.4% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 45.0 | 2.87e-01 | 89.7% | 19.7% |
| 3jbtA05 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.80e-01 | 89.7% | 23.8% |
| 2ivnA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 40.0 | 3.06e-01 | 80.9% | 57.7% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 40.0 | 3.46e-01 | 82.4% | 71.7% |
| 4c97A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 3.36e-01 | 91.2% | 78.4% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.27e-01 | 77.9% | 53.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972938 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.75 | 55.0 | 3.29e-01 | 76.5% | 13.9% |
| 3758651 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.72 | 54.0 | 3.85e-01 | 77.9% | 44.7% |
| 5007119 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.71 | 55.0 | 4.72e-01 | 82.4% | 100.0% |
| 3967554 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.71 | 52.0 | 3.07e-01 | 76.5% | 12.8% |
| 3225029 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 60.0 | 4.28e-01 | 95.6% | 71.5% |
| 5011125 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.67 | 58.0 | 4.97e-01 | 100.0% | 80.0% |
| 5076116 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.65 | 54.0 | 4.33e-01 | 94.1% | 93.6% |
| 4570660 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 57.0 | 4.46e-01 | 98.5% | 85.5% |
| 5078624 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.64 | 58.0 | 4.98e-01 | 100.0% | 77.1% |
| 3856357 | 633.23.1.3 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl | 0.63 | 55.0 | 4.03e-01 | 97.1% | 97.3% |
| 3640307 | 206.1.1.34 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase_fungal | 0.63 | 50.0 | 3.27e-01 | 85.3% | 52.8% |
| 3471734 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.62 | 55.0 | 5.28e-01 | 100.0% | 85.9% |
| 3959610 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.61 | 55.0 | 4.36e-01 | 100.0% | 94.7% |
| 3955267 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.60 | 54.0 | 4.32e-01 | 100.0% | 93.3% |
| 5045489 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.60 | 45.0 | 3.67e-01 | 80.9% | 97.7% |
| 3415741 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 55.0 | 4.24e-01 | 100.0% | 88.3% |
| 5039314 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 55.0 | 4.13e-01 | 100.0% | 90.3% |
| 3534391 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 55.0 | 3.91e-01 | 100.0% | 67.9% |
| 3517822 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 48.0 | 4.05e-01 | 89.7% | 80.9% |
| 3515942 | 7516.1.1.82 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_2 | 0.58 | 49.0 | 2.83e-01 | 92.6% | 39.6% |
| 3689340 | 3991.1.1.1 ↗ | alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › DUF4211 | 0.57 | 44.0 | 3.20e-01 | 85.3% | 91.5% |
| 4958814 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.56 | 44.0 | 2.97e-01 | 85.3% | 31.5% |
| 4976198 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.55 | 46.0 | 4.36e-01 | 97.1% | 91.8% |
| 4308194 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 40.0 | 3.75e-01 | 83.8% | 71.8% |
| 4161565 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 43.0 | 3.80e-01 | 89.7% | 93.7% |
| 4606628 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.51 | 40.0 | 2.89e-01 | 83.8% | 67.4% |
| 4971267 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.50 | 41.0 | 3.46e-01 | 97.1% | 61.5% |