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NC_070936.1__YP_010665472.1__PQB72_gp011__00011
Bact-VirNC_070936.1__YP_010665472.1__PQB72_gp011__00011
Identity
- Accession:
- NC_070936 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 2664939
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-115
Domain cluster:
rep: OL539468.1__UGO54127.1__HAYMO_145__00145__D9-135
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.80 | 59.0 | 5.66e-01 | 100.0% | 66.7% |
| 2rijA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 60.0 | 5.21e-01 | 100.0% | 60.8% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.67 | 37.0 | 4.21e-01 | 90.2% | 71.3% |
| 1kpgD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 48.0 | 3.57e-01 | 76.8% | 97.2% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 42.0 | 4.47e-01 | 88.4% | 82.2% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.58 | 50.0 | 3.80e-01 | 95.5% | 78.1% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.57 | 36.0 | 3.65e-01 | 94.6% | 63.4% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 31.0 | 4.15e-01 | 80.4% | 98.4% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.56 | 40.0 | 4.55e-01 | 92.9% | 97.7% |
| 3hi0A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.56 | 48.0 | 4.14e-01 | 96.4% | 89.1% |
| 3p9dG01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 48.0 | 3.69e-01 | 96.4% | 83.0% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.54 | 47.0 | 3.57e-01 | 96.4% | 77.7% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 32.0 | 4.06e-01 | 91.1% | 100.0% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.53 | 42.0 | 4.01e-01 | 84.8% | 71.6% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 34.0 | 3.90e-01 | 92.0% | 93.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3283518 | 2003.1.5.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS | 0.68 | 47.0 | 3.53e-01 | 71.4% | 95.6% |
| 4210546 | 3610.1.1.2 ↗ | a+b complex topology › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › THDPS_M,THDPS_N | 0.67 | 61.0 | 4.83e-01 | 100.0% | 50.7% |
| 1902252 | 2003.1.5.152 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 | 0.67 | 50.0 | 3.73e-01 | 77.7% | 95.5% |
| 3595946 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.67 | 34.0 | 4.35e-01 | 92.9% | 84.6% |
| 4345155 | 604.27.1.1 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac › Endotoxin_C2 | 0.65 | 37.0 | 4.45e-01 | 92.9% | 84.0% |
| 3594784 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.60 | 44.0 | 4.69e-01 | 96.4% | 88.4% |
| 5033625 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.56 | 44.0 | 3.37e-01 | 83.0% | 82.0% |
| 5004344 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.55 | 48.0 | 3.72e-01 | 96.4% | 83.1% |
| 4938876 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.54 | 47.0 | 3.58e-01 | 96.4% | 75.4% |
| 3276327 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.54 | 48.0 | 3.88e-01 | 96.4% | 76.5% |
| 2845073 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.53 | 46.0 | 4.07e-01 | 97.3% | 85.5% |
| 4978957 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.53 | 43.0 | 3.25e-01 | 89.3% | 85.9% |
| 3247705 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 40.0 | 2.98e-01 | 79.5% | 97.5% |
| 3742843 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.51 | 40.0 | 3.73e-01 | 94.6% | 66.4% |
| 3805186 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.51 | 37.0 | 3.79e-01 | 100.0% | 80.0% |