←Back to structures
NC_070936.1__YP_010665493.1__PQB72_gp032__00032
Bact-VirNC_070936.1__YP_010665493.1__PQB72_gp032__00032
Identity
- Accession:
- NC_070936 ↗
- Kingdom:
- phage
Quality
69.0
mean pLDDT
Taxonomy
TaxID: 2664939
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-49_150-202
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.59 | 36.0 | 4.11e-01 | 100.0% | 88.2% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.59 | 42.0 | 4.65e-01 | 100.0% | 100.0% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 36.0 | 3.58e-01 | 100.0% | 59.0% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 36.0 | 3.60e-01 | 100.0% | 60.2% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 33.0 | 3.43e-01 | 100.0% | 57.9% |
| 2nuhA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 35.0 | 3.52e-01 | 100.0% | 59.6% |
| 3ayhB01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.57 | 40.0 | 4.40e-01 | 100.0% | 96.2% |
| 2qdfA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 37.0 | 4.14e-01 | 96.0% | 88.3% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.56 | 49.0 | 4.45e-01 | 100.0% | 77.1% |
| 6qdwt00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 34.0 | 3.55e-01 | 100.0% | 65.6% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 36.0 | 3.84e-01 | 100.0% | 74.4% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.54 | 35.0 | 3.68e-01 | 100.0% | 71.3% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.54 | 41.0 | 3.85e-01 | 100.0% | 65.9% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.53 | 46.0 | 4.14e-01 | 100.0% | 92.7% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 33.0 | 3.56e-01 | 100.0% | 76.9% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.53 | 47.0 | 4.10e-01 | 100.0% | 89.5% |
| 2bg9C01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 36.0 | 2.93e-01 | 100.0% | 35.4% |
| 1b3tA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 34.0 | 3.04e-01 | 100.0% | 46.3% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.51 | 39.0 | 3.85e-01 | 100.0% | 74.1% |
| 6d6tA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.50 | 35.0 | 2.88e-01 | 100.0% | 35.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4562028 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.57 | 35.0 | 3.17e-01 | 100.0% | 42.8% |
| 4660104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 36.0 | 4.18e-01 | 90.1% | 98.5% |
| 4930726 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.56 | 39.0 | 4.34e-01 | 98.0% | 97.3% |
| 4188078 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.56 | 34.0 | 3.30e-01 | 100.0% | 53.0% |
| 4448201 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.56 | 34.0 | 3.53e-01 | 100.0% | 62.6% |
| 5054672 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.56 | 39.0 | 4.31e-01 | 98.0% | 97.3% |
| 3478414 | 304.49.1.0 ↗ | a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 | 0.56 | 42.0 | 3.85e-01 | 100.0% | 59.4% |
| 4145026 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.55 | 35.0 | 3.54e-01 | 100.0% | 64.0% |
| 3513084 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 35.0 | 3.28e-01 | 100.0% | 50.0% |
| 4182477 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.55 | 33.0 | 3.38e-01 | 100.0% | 61.0% |
| 3835251 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.55 | 33.0 | 3.44e-01 | 100.0% | 64.2% |
| 3711966 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.54 | 30.0 | 3.75e-01 | 85.1% | 96.4% |
| 3992739 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 40.0 | 3.25e-01 | 100.0% | 41.6% |
| 4938014 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.54 | 48.0 | 4.39e-01 | 100.0% | 98.5% |
| 3232018 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.54 | 35.0 | 3.20e-01 | 100.0% | 46.2% |
| 1325196 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.54 | 40.0 | 3.72e-01 | 100.0% | 60.9% |
| 4954550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.53 | 39.0 | 3.84e-01 | 100.0% | 69.6% |
| 4941255 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.53 | 46.0 | 4.16e-01 | 99.0% | 92.4% |
| 3267253 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 29.0 | 3.04e-01 | 100.0% | 54.7% |
| 3486350 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 33.0 | 3.49e-01 | 81.2% | 69.9% |
| 3401330 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 37.0 | 3.50e-01 | 100.0% | 61.7% |
| 3988923 | 101.1.2.158 ↗ | alpha arrays › HTH › HTH › winged helix domain › DpnI_C | 0.51 | 33.0 | 3.68e-01 | 87.1% | 89.2% |
| 3790670 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 36.0 | 3.17e-01 | 100.0% | 49.3% |
| 3484885 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.51 | 40.0 | 3.61e-01 | 100.0% | 60.0% |
| 4881516 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.51 | 36.0 | 2.89e-01 | 100.0% | 35.1% |
| 4944050 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.50 | 38.0 | 3.76e-01 | 100.0% | 74.5% |
D2
high
residues 54-148