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NC_070936.1__YP_010665584.1__PQB72_gp123__00123

Bact-Vir

NC_070936.1__YP_010665584.1__PQB72_gp123__00123

Identity

Accession:
NC_070936 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Nimduovirus› Klebsiella_phage_N1M2

TaxID: 2664939

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
Domain cluster: rep: NC_042018.1__YP_009612849.1__FDI45_gp105__00105__D11-93
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 47.0 4.19e-01 70.2% 78.3%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 46.0 4.35e-01 70.2% 90.9%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 47.0 4.01e-01 72.6% 94.7%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 46.0 3.88e-01 72.6% 71.5%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 50.0 4.01e-01 82.1% 83.0%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.62 50.0 4.64e-01 86.9% 68.6%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.41e-01 73.8% 53.1%
3tojA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 43.0 3.38e-01 72.6% 58.7%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 47.0 3.42e-01 84.5% 40.1%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 55.0 4.30e-01 100.0% 80.0%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 53.0 4.16e-01 100.0% 79.9%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.59 52.0 3.54e-01 94.0% 73.8%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.59 50.0 3.41e-01 90.5% 75.1%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 3.84e-01 83.3% 81.7%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.42e-01 71.4% 91.2%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.96e-01 83.3% 27.7%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.56 45.0 4.47e-01 97.6% 84.3%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 46.0 3.33e-01 90.5% 79.2%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 39.0 3.46e-01 72.6% 93.2%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 48.0 3.16e-01 100.0% 43.7%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 38.0 3.30e-01 73.8% 70.2%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 4.10e-01 100.0% 75.9%
1cp9B02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 36.0 3.87e-01 81.0% 79.5%
4kc3A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 47.0 4.08e-01 100.0% 95.6%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.44e-01 90.5% 49.2%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 48.0 3.31e-01 100.0% 38.7%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 42.0 3.66e-01 88.1% 96.2%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 46.0 2.99e-01 100.0% 91.4%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 36.0 3.05e-01 98.8% 43.0%
5cdhG00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 46.0 3.09e-01 100.0% 99.4%
6mrfA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.51 44.0 3.16e-01 96.4% 84.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597007 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 45.0 3.53e-01 84.5% 34.1%
4203573 213.1.1.75 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB, Acetyltransf_6 0.65 50.0 3.96e-01 82.1% 80.6%
3901910 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.65 45.0 3.47e-01 72.6% 56.8%
3251374 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.63 44.0 3.15e-01 72.6% 41.2%
3742001 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 43.0 3.17e-01 71.4% 52.2%
3264222 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.62 43.0 3.06e-01 71.4% 42.0%
4345013 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.61 56.0 4.50e-01 100.0% 58.7%
3703246 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.61 49.0 4.45e-01 85.7% 85.5%
4927714 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 2.96e-01 84.5% 25.6%
3473080 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.59 47.0 2.93e-01 84.5% 27.0%
3690953 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 44.0 4.12e-01 79.8% 97.1%
3625919 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.58 53.0 4.11e-01 100.0% 52.2%
5018904 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.58 47.0 3.55e-01 100.0% 37.4%
5022814 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.57 44.0 4.62e-01 85.7% 93.3%
3588413 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 50.0 4.15e-01 100.0% 70.3%
3944955 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.56 44.0 3.74e-01 85.7% 68.6%
4948218 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.56 46.0 4.61e-01 90.5% 94.1%
3648015 9.1.1.21 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Cyclin_D1_bind 0.55 49.0 3.93e-01 100.0% 76.5%
3965943 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.55 45.0 3.52e-01 90.5% 79.3%
3337354 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.54 48.0 4.20e-01 100.0% 85.4%
3917386 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.54 48.0 3.81e-01 100.0% 81.7%
3702536 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 37.0 2.95e-01 85.7% 33.0%
1279538 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 48.0 3.31e-01 100.0% 38.7%
3610705 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.53 46.0 2.95e-01 100.0% 49.3%
3702318 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 46.0 3.41e-01 98.8% 93.0%
3419181 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 47.0 3.24e-01 100.0% 46.4%
3554160 5.1.4.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.52 43.0 2.87e-01 89.3% 27.9%
3612982 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 46.0 3.87e-01 100.0% 59.0%
3257765 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 44.0 3.62e-01 100.0% 56.5%
3451281 71.1.1.12 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.51 44.0 3.10e-01 100.0% 68.3%